Variant report

Variant	rs544379502
Chromosome Location	chr5:2039274-2039275
allele	-/GCTGGTCCCCT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:2038456..2039644-chr5:2151099..2152060,8	MCF-7	breast:
2	chr5:1976228..1977009-chr5:2038725..2039367,2	MCF-7	breast:
3	chr5:2038968..2041290-chr5:2043648..2046348,2	K562	blood:
4	chr5:1763462..1764367-chr5:2038422..2039408,4	K562	blood:
5	chr5:2038885..2040468-chr5:2043552..2045148,2	K562	blood:
6	chr5:2038277..2039385-chr5:2150928..2152028,5	MCF-7	breast:
7	chr5:1667086..1668362-chr5:2038669..2039410,3	MCF-7	breast:
8	chr10:16562709..16563518-chr5:2038579..2039403,2	MCF-7	breast:
9	chr5:1763381..1764606-chr5:2038413..2039439,5	MCF-7	breast:
10	chr5:1772046..1773026-chr5:2038306..2039405,3	MCF-7	breast:
11	chr5:1883446..1883946-chr5:2038442..2039397,2	K562	blood:
12	chr5:2038798..2040363-chr5:2040372..2041930,2	MCF-7	breast:

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817407	chr5:1495354-2191460	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv869236	chr5:1719263-2259100	Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv915846	chr5:1891098-2167677	Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1026930	chr5:1898993-2126061	Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv427705	chr5:1950467-2115059	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv596900	chr5:2020274-2066165	Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3420746	chr5:2037777-2040325	Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3323423	chr5:2038102-2040300	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1028582	chr5:2038130-2063667	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1032941	chr5:2038130-2072872	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:2038400-2039400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr5:2038400-2039600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:2038800-2039400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:2038800-2039400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:2038800-2039600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:2038800-2039800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:2038800-2040600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:2039000-2039400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr5:2039000-2039400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr5:2039000-2039400	Enhancers	Adipose Nuclei	Adipose
11	chr5:2039000-2039400	Bivalent Enhancer	Brain Germinal Matrix	brain
12	chr5:2039000-2039600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:2039000-2039600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:2039000-2039600	Enhancers	Esophagus	oesophagus
15	chr5:2039000-2039600	Enhancers	Lung	lung
16	chr5:2039000-2039800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:2039000-2039800	Bivalent Enhancer	Fetal Stomach	stomach
18	chr5:2039000-2039800	Enhancers	Pancreas	Pancrea
19	chr5:2039000-2039800	Enhancers	HMEC	breast
20	chr5:2039000-2039800	Enhancers	NHEK	skin
21	chr5:2039200-2039400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
22	chr5:2039200-2039600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr5:2039200-2039600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
24	chr5:2039200-2039600	Enhancers	Fetal Heart	heart
25	chr5:2039200-2039800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr5:2039200-2039800	Enhancers	Right Ventricle	heart
27	chr5:2039200-2040200	Enhancers	H1 Cell Line	embryonic stem cell
28	chr5:2039200-2040200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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