Variant report

Variant	rs544386880
Chromosome Location	chr1:161263788-161263789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv432986	chr1:161221133-161673682	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv525443	chr1:161263380-161274311	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv517826	chr1:161263380-161277601	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161243200-161264000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:161250400-161274200	Weak transcription	Fetal Stomach	stomach
3	chr1:161252400-161274800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr1:161255200-161274800	Weak transcription	Lung	lung
5	chr1:161255600-161274600	Weak transcription	Adipose Nuclei	Adipose
6	chr1:161256400-161272800	Weak transcription	Primary T cells from cord blood	blood
7	chr1:161259000-161267400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:161260200-161265600	Weak transcription	HepG2	liver
9	chr1:161261000-161272800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr1:161261400-161273200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr1:161261400-161273800	Weak transcription	Fetal Intestine Small	intestine
12	chr1:161261600-161274200	Weak transcription	Fetal Intestine Large	intestine
13	chr1:161263200-161274600	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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