Variant report

Variant	rs544417730
Chromosome Location	chr17:44657415-44657416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr17:44656857-44657538	A549	lung:	n/a	n/a
2	POLR2A	chr17:44655973-44657705	GM12892	blood:	n/a	n/a
3	POLR2A	chr17:44657349-44657449	HCT-116	colon:	n/a	n/a
4	USF1	chr17:44657159-44657624	HepG2	liver:	n/a	n/a
5	POLR2A	chr17:44657260-44657771	U87	brain:	n/a	n/a
6	MAX	chr17:44657277-44657456	K562	blood:	n/a	chr17:44657289-44657298
7	MAX	chr17:44657299-44657423	K562	blood:	n/a	n/a
8	POLR2A	chr17:44657330-44657518	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr17:44656282-44657677	PFSK-1	brain:	n/a	n/a
10	POU2F2	chr17:44656320-44657703	GM12878	blood:	n/a	n/a
11	SP2	chr17:44656727-44657577	HepG2	liver:	n/a	chr17:44657298-44657308 chr17:44657131-44657154
12	PAX5	chr17:44657221-44657452	GM12878	blood:	n/a	n/a
13	POLR2A	chr17:44657350-44657549	A549	lung:	n/a	n/a
14	POLR2A	chr17:44656093-44657763	GM12892	blood:	n/a	n/a
15	POLR2A	chr17:44657256-44657577	GM12891	blood:	n/a	n/a
16	SP1	chr17:44656879-44657463	K562	blood:	n/a	chr17:44657262-44657272 chr17:44657333-44657354 chr17:44657262-44657272 chr17:44657275-44657285 chr17:44657276-44657285 chr17:44657054-44657068
17	MYC	chr17:44657157-44657471	MCF-7	breast:	n/a	chr17:44657266-44657275 chr17:44657289-44657298
18	POLR2A	chr17:44656350-44657594	MCF-7	breast:	n/a	n/a
19	SIN3AK20	chr17:44656312-44657652	HepG2	liver:	n/a	n/a
20	RXRA	chr17:44657165-44657619	HepG2	liver:	n/a	n/a
21	POU2F2	chr17:44656400-44657552	GM12891	blood:	n/a	n/a
22	POLR2A	chr17:44656294-44657686	HepG2	liver:	n/a	n/a
23	USF1	chr17:44657153-44657454	HepG2	liver:	n/a	n/a
24	POLR2A	chr17:44656395-44657898	PFSK-1	brain:	n/a	n/a
25	TCF12	chr17:44656898-44657575	HepG2	liver:	n/a	n/a
26	POLR2A	chr17:44657208-44657633	SK-N-SH	brain:	n/a	n/a
27	POLR2A	chr17:44656202-44657584	H1-hESC	embryonic stem cell:	n/a	n/a
28	E2F6	chr17:44657307-44657424	K562	blood:	n/a	chr17:44657334-44657343
29	JUND	chr17:44657228-44657520	HepG2	liver:	n/a	chr17:44657299-44657308 chr17:44657336-44657345
30	FOXP2	chr17:44657130-44657530	PFSK-1	brain:	n/a	n/a
31	CTCF	chr17:44657271-44657481	Spleen_OC	spleen:	n/a	n/a
32	SP1	chr17:44656326-44657679	A549	lung:	n/a	chr17:44657262-44657272 chr17:44657333-44657354 chr17:44657262-44657272 chr17:44657275-44657285 chr17:44657276-44657285 chr17:44657054-44657068 chr17:44656705-44656712 chr17:44657479-44657488
33	SP1	chr17:44656308-44657809	A549	lung:	n/a	chr17:44657262-44657272 chr17:44657333-44657354 chr17:44657262-44657272 chr17:44657275-44657285 chr17:44657276-44657285 chr17:44657054-44657068 chr17:44656705-44656712 chr17:44657479-44657488
34	POLR2A	chr17:44657150-44657620	GM12878	blood:	n/a	n/a
35	POLR2A	chr17:44655886-44657793	H1-hESC	embryonic stem cell:	n/a	n/a
36	CBX3	chr17:44656873-44657506	K562	blood:	n/a	n/a
37	FOXA1	chr17:44656993-44657594	HepG2	liver:	n/a	n/a
38	POLR2A	chr17:44656285-44657557	H1-hESC	embryonic stem cell:	n/a	n/a
39	FOXA2	chr17:44657029-44657562	A549	lung:	n/a	n/a
40	POLR2A	chr17:44656416-44657741	HUVEC	blood vessel:	n/a	n/a
41	POLR2A	chr17:44657275-44657617	GM12878	blood:	n/a	n/a
42	USF1	chr17:44657224-44657476	A549	lung:	n/a	n/a
43	POLR2A	chr17:44656297-44657765	PANC-1	pancreas:	n/a	n/a
44	POLR2A	chr17:44656107-44657727	GM12892	blood:	n/a	n/a
45	SIN3AK20	chr17:44656458-44657598	HepG2	liver:	n/a	n/a
46	POLR2A	chr17:44657176-44657574	H1-hESC	embryonic stem cell:	n/a	n/a
47	TAF1	chr17:44656255-44657630	H1-hESC	embryonic stem cell:	n/a	n/a
48	SP1	chr17:44656387-44657605	GM12878	blood:	n/a	chr17:44657262-44657272 chr17:44657333-44657354 chr17:44657262-44657272 chr17:44657275-44657285 chr17:44657276-44657285 chr17:44657054-44657068 chr17:44656705-44656712 chr17:44657479-44657488
49	POLR2A	chr17:44656222-44657628	GM12891	blood:	n/a	n/a
50	POLR2A	chr17:44657227-44657649	SK-N-MC	brain:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr17:44657394-44657444	AG10803	skin:	n/a
2	chr17:44657394-44657444	HRE	kidney:	n/a
3	chr17:44657394-44657444	Hepatocyte	liver:	n/a
4	chr17:44657394-44657444	GM12891	blood:	n/a
5	chr17:44657394-44657444	BE2_C	brain:	n/a
6	chr17:44657394-44657444	AG04449	skin:	fetal
7	chr17:44657394-44657444	Jurkat	blood:	n/a
8	chr17:44657394-44657444	HIPEpiC	eye:	n/a
9	chr17:44657394-44657444	PANC-1	pancreas:	n/a
10	chr17:44657394-44657444	HRPEpiC	eye:	n/a
11	chr17:44657394-44657444	BJ	skin:	n/a
12	chr17:44657394-44657444	HCF	heart:	n/a
13	chr17:44657394-44657444	U87	brain:	n/a
14	chr17:44657394-44657444	MCF-7	breast:	n/a
15	chr17:44657394-44657444	H1-hESC	embryonic stem cell:	embryo
16	chr17:44657394-44657444	ovcar-3	ovarian:	n/a
17	chr17:44657394-44657444	HL-60	blood:	n/a
18	chr17:44657394-44657444	A549	lung:	n/a
19	chr17:44657394-44657444	GM06990	blood:	n/a
20	chr17:44657394-44657444	AoSMC	blood vessel:	n/a
21	chr17:44657394-44657444	HCT-116	colon:	n/a
22	chr17:44657394-44657444	SKMC	muscle:	n/a
23	chr17:44657394-44657444	NB4	blood:	n/a
24	chr17:44657394-44657444	AG09309	skin:	n/a
25	chr17:44657394-44657444	Caco-2	colon:	n/a
26	chr17:44657394-44657444	RPTEC	kidney:	n/a
27	chr17:44657394-44657444	Hela-S3	cervix:	n/a
28	chr17:44657394-44657444	GM12892	blood:	n/a
29	chr17:44657394-44657444	T-47D	breast:	n/a
30	chr17:44657394-44657444	MCF10A-Er-Src	breast:	n/a
31	chr17:44657394-44657444	AG04450	lung:	fetal
32	chr17:44657394-44657444	GM19239	blood:	n/a
33	chr17:44657394-44657444	LNCaP	prostate:	n/a
34	chr17:44657394-44657444	ProgFib	skin:	n/a
35	chr17:44657394-44657444	SAEC	small airway:	n/a
36	chr17:44657394-44657444	PFSK-1	brain:	n/a
37	chr17:44657394-44657444	NH-A	brain:	n/a
38	chr17:44657394-44657444	SK-N-MC	brain:	n/a
39	chr17:44657394-44657444	HAEpiC	amniotic membrane:	n/a
40	chr17:44657394-44657444	HEEpiC	esophagus:	n/a
41	chr17:44657394-44657444	NHDF-neo	bronchial:	n/a
42	chr17:44657394-44657444	K562	blood:	n/a
43	chr17:44657394-44657444	HEK293	kidney:	embryo
44	chr17:44657394-44657444	HCPEpiC	choroid plexus:	n/a
45	chr17:44657394-44657444	ECC-1	luminal epithelium:	n/a
46	chr17:44657394-44657444	HUVEC	blood vessel:	n/a
47	chr17:44657394-44657444	HNPCEpiC	eye:	n/a
48	chr17:44657394-44657444	GM12878	blood:	n/a
49	chr17:44657394-44657444	HCM	heart:	n/a
50	chr17:44657394-44657444	NHBE	bronchial:	n/a

Variant related genes	Relation type
ARL17A	TF binding region
ARL17A	CpG island

Extended variants
information (count: 649 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:649 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529278	chr17:43706886-44694283	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv431716	chr17:43893020-44868187	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
3	esv2751685	chr17:44004972-44789317	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv431717	chr17:44075901-44809001	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv431718	chr17:44094463-44873614	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
6	nsv516807	chr17:44109474-44793283	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
7	nsv543359	chr17:44132076-44792529	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
8	nsv529718	chr17:44138513-44694283	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
9	nsv916230	chr17:44138515-44694311	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
10	esv2751691	chr17:44139662-44795190	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
11	esv2751692	chr17:44139662-44811116	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
12	esv2751694	chr17:44139682-44789285	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
13	esv2751695	chr17:44139682-44801340	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
14	nsv908315	chr17:44140748-44788310	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
15	nsv543362	chr17:44141175-44792529	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
16	esv2751697	chr17:44144214-44796777	Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
17	nsv431730	chr17:44144214-44826056	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
18	nsv431729	chr17:44144214-44869063	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
19	nsv543364	chr17:44151408-44792529	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
20	esv2751705	chr17:44157581-44811116	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
21	nsv431750	chr17:44157597-44789285	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
22	nsv821687	chr17:44159555-44770359	Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
23	nsv543365	chr17:44159802-44806240	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
24	esv2751732	chr17:44162284-44795234	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
25	esv2751733	chr17:44162284-44795234	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
26	esv2757660	chr17:44162284-44868187	Enhancers Genic enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
27	esv33048	chr17:44162433-44694253	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
28	esv2751734	chr17:44162597-44796777	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
29	esv2751735	chr17:44162597-44811116	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
30	nsv1065338	chr17:44163086-44673663	Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
31	nsv1065913	chr17:44163086-44677980	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
32	nsv9564	chr17:44165184-44787208	Flanking Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
33	esv20060	chr17:44165296-44784771	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
34	nsv543366	chr17:44165725-44806240	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
35	nsv543367	chr17:44165725-44811728	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
36	esv2751741	chr17:44165782-44789285	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
37	esv2751742	chr17:44165782-44789285	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
38	nsv431788	chr17:44165782-44795190	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
39	nsv431796	chr17:44165782-44811116	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
40	nsv1059665	chr17:44165803-44660194	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
41	nsv1066392	chr17:44165803-44689669	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
42	nsv1061764	chr17:44165803-44705963	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
43	nsv1058972	chr17:44165803-44722830	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
44	nsv1061421	chr17:44165803-44743992	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
45	nsv1058611	chr17:44165803-44752288	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
46	nsv1060287	chr17:44165803-44785670	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
47	esv2751747	chr17:44165803-44789285	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
48	esv2751748	chr17:44165803-44789285	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
49	nsv1060227	chr17:44165803-44790799	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
50	esv2751749	chr17:44165803-44795190	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:44650600-44657600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr17:44651000-44657600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr17:44651000-44657600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr17:44653000-44657600	Weak transcription	Gastric	stomach
5	chr17:44657000-44657800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
6	chr17:44657000-44657800	Active TSS	Fetal Brain Female	brain
7	chr17:44657000-44657800	Active TSS	Fetal Intestine Large	intestine
8	chr17:44657000-44657800	Active TSS	Fetal Intestine Small	intestine
9	chr17:44657000-44657800	Active TSS	Thymus	Thymus
10	chr17:44657200-44657600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr17:44657200-44657600	Active TSS	Primary neutrophils fromperipheralblood	blood
12	chr17:44657200-44657800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr17:44657200-44657800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr17:44657200-44657800	Active TSS	Cortex derived primary cultured neurospheres	brain
15	chr17:44657200-44657800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr17:44657200-44657800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr17:44657200-44657800	Active TSS	Brain Anterior Caudate	brain
18	chr17:44657200-44657800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr17:44657200-44657800	Active TSS	Fetal Stomach	stomach
20	chr17:44657400-44657600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr17:44657400-44657600	Active TSS	Primary monocytes fromperipheralblood	blood
22	chr17:44657400-44657600	Active TSS	Primary B cells from peripheral blood	blood
23	chr17:44657400-44657600	Active TSS	Primary T cells fromperipheralblood	blood
24	chr17:44657400-44657600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr17:44657400-44657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr17:44657400-44657600	Active TSS	Placenta	Placenta
27	chr17:44657400-44657600	Active TSS	Monocytes-CD14+_RO01746	blood
28	chr17:44657400-44657800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr17:44657400-44657800	Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr17:44657400-44657800	Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr17:44657400-44657800	Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr17:44657400-44657800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr17:44657400-44657800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr17:44657400-44657800	Active TSS	Primary hematopoietic stem cells short term culture	blood
35	chr17:44657400-44657800	Active TSS	Primary T killer memory cells from peripheral blood	blood
36	chr17:44657400-44657800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr17:44657400-44657800	Active TSS	Muscle Satellite Cultured Cells	--
38	chr17:44657400-44657800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr17:44657400-44657800	Active TSS	Adipose Nuclei	Adipose
40	chr17:44657400-44657800	Active TSS	Liver	Liver
41	chr17:44657400-44657800	Active TSS	Brain Angular Gyrus	brain
42	chr17:44657400-44657800	Active TSS	Brain Germinal Matrix	brain
43	chr17:44657400-44657800	Active TSS	Brain Hippocampus Middle	brain
44	chr17:44657400-44657800	Active TSS	Brain Inferior Temporal Lobe	brain
45	chr17:44657400-44657800	Active TSS	Duodenum Mucosa	Duodenum
46	chr17:44657400-44657800	Active TSS	Duodenum Smooth Muscle	Duodenum
47	chr17:44657400-44657800	Active TSS	Fetal Lung	lung
48	chr17:44657400-44657800	Active TSS	Fetal Muscle Trunk	muscle
49	chr17:44657400-44657800	Active TSS	Fetal Muscle Leg	muscle
50	chr17:44657400-44657800	Active TSS	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links