Variant report

Variant	rs544431438
Chromosome Location	chr15:83677015-83677016
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:83673940..83677248-chr15:83678210..83681021,4	MCF-7	breast:
2	chr15:83672818..83677219-chr15:83678356..83680913,3	K562	blood:

Variant related genes	Relation type
ENSG00000169609	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv3395622	chr15:83676898-83677335	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83655800-83679200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:83656200-83677800	Weak transcription	Fetal Brain Male	brain
3	chr15:83656200-83679000	Weak transcription	Right Ventricle	heart
4	chr15:83656400-83679200	Weak transcription	Fetal Heart	heart
5	chr15:83658000-83679000	Weak transcription	Gastric	stomach
6	chr15:83665600-83679400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:83669200-83677200	Weak transcription	Aorta	Aorta
8	chr15:83669200-83678200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr15:83669200-83678800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr15:83669200-83679000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:83669400-83677200	Weak transcription	Fetal Lung	lung
12	chr15:83669400-83678000	Weak transcription	Psoas Muscle	Psoas
13	chr15:83669400-83678200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr15:83669400-83678800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:83669400-83678800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr15:83669400-83679000	Weak transcription	Right Atrium	heart
17	chr15:83669600-83679000	Weak transcription	Pancreas	Pancrea
18	chr15:83670000-83678400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr15:83671400-83678400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr15:83672200-83678000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:83672200-83678600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr15:83672200-83678800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:83672400-83678600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr15:83672400-83678600	Strong transcription	Fetal Muscle Trunk	muscle
25	chr15:83672400-83679000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:83672400-83679000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr15:83672800-83678400	Strong transcription	Fetal Stomach	stomach
28	chr15:83673000-83678200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:83673000-83678200	Strong transcription	Adipose Nuclei	Adipose
30	chr15:83673000-83678600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr15:83673000-83678600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr15:83673000-83678800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:83673000-83678800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr15:83673000-83678800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr15:83673000-83679000	Strong transcription	Fetal Muscle Leg	muscle
36	chr15:83673000-83679000	Strong transcription	Placenta	Placenta
37	chr15:83673200-83679000	Strong transcription	Osteobl	bone
38	chr15:83673400-83677600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr15:83673400-83678600	Strong transcription	Liver	Liver
40	chr15:83673400-83678800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr15:83673400-83679000	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr15:83673400-83679000	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr15:83673600-83677200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr15:83673600-83678000	Strong transcription	Duodenum Mucosa	Duodenum
45	chr15:83673600-83678200	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr15:83673600-83678200	Strong transcription	A549	lung
47	chr15:83673600-83678400	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr15:83673600-83678400	Strong transcription	Primary T cells from cord blood	blood
49	chr15:83673600-83678600	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr15:83673600-83678600	Strong transcription	Primary T helper cells fromperipheralblood	blood

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