Variant report

Variant	rs544439681
Chromosome Location	chr3:155466529-155466530
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr3:155465273-155466975	U2OS	brain:	n/a	n/a
2	MAZ	chr3:155466459-155466859	HepG2	liver:	n/a	n/a
3	MAFK	chr3:155466528-155467111	HepG2	liver:	n/a	n/a
4	KAP1	chr3:155465596-155467159	HEK293	kidney:	n/a	n/a
5	ARID3A	chr3:155466486-155467223	HepG2	liver:	n/a	n/a
6	FOSL2	chr3:155466259-155467123	A549	lung:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:155460020..155464783-chr3:155465201..155469112,6	K562	blood:
2	chr3:155461411..155464910-chr3:155465071..155468362,4	MCF-7	breast:
3	chr3:155461079..155463376-chr3:155465033..155467779,3	MCF-7	breast:

No data

Variant related genes	Relation type
PLCH1	TF binding region
ENSG00000214919	Chromatin interaction
ENSG00000114805	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv829763	chr3:155417552-155470079	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
3	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv521244	chr3:155465491-155467069	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	n/a
5	nsv526490	chr3:155465932-155467069	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155462800-155466600	Weak transcription	Hela-S3	cervix
2	chr3:155463200-155466600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:155463200-155467400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:155463800-155475200	Weak transcription	Left Ventricle	heart
5	chr3:155463800-155487800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:155463800-155501200	Weak transcription	Aorta	Aorta
7	chr3:155464000-155476600	Weak transcription	Ovary	ovary
8	chr3:155464200-155466600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr3:155464200-155469800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr3:155464200-155474800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:155464200-155487600	Weak transcription	Brain Hippocampus Middle	brain
12	chr3:155464200-155487600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:155464200-155487800	Weak transcription	Adipose Nuclei	Adipose
14	chr3:155464200-155487800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr3:155464200-155487800	Weak transcription	Pancreas	Pancrea
16	chr3:155464200-155489600	Weak transcription	Brain Anterior Caudate	brain
17	chr3:155464200-155490600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr3:155464400-155467200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:155464400-155467400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr3:155464400-155467400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr3:155464600-155467200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr3:155464600-155467400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr3:155464600-155467400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr3:155464600-155487800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr3:155465000-155467400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:155465000-155468200	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr3:155465200-155466800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr3:155465200-155467000	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr3:155465400-155468000	Enhancers	H1 Cell Line	embryonic stem cell
30	chr3:155465600-155467000	Enhancers	Fetal Brain Female	brain
31	chr3:155465600-155467400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:155465800-155467200	Enhancers	H9 Cell Line	embryonic stem cell
33	chr3:155465800-155467200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr3:155465800-155468000	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr3:155466000-155467000	Enhancers	Fetal Stomach	stomach
36	chr3:155466000-155467200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr3:155466000-155467200	Enhancers	Fetal Intestine Small	intestine
38	chr3:155466000-155467200	Enhancers	Fetal Kidney	kidney
39	chr3:155466000-155467400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr3:155466000-155468200	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr3:155466200-155466600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr3:155466200-155467200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:155466200-155467200	Enhancers	K562	blood
44	chr3:155466200-155467400	Flanking Active TSS	A549	lung
45	chr3:155466400-155467000	Enhancers	NHDF-Ad	bronchial
46	chr3:155466400-155467200	Enhancers	Fetal Intestine Large	intestine
47	chr3:155466400-155467400	Flanking Active TSS	HepG2	liver
48	chr3:155466400-155469600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr3:155466400-155484600	Weak transcription	Fetal Brain Male	brain

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