Variant report

Variant	rs544450397
Chromosome Location	chr1:93482550-93482551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830614	chr1:93465978-93678700	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv870775	chr1:93481640-93543119	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93474200-93490600	Weak transcription	K562	blood
2	chr1:93478200-93482600	Enhancers	Fetal Muscle Leg	muscle
3	chr1:93480400-93491000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr1:93481600-93482600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:93481800-93482600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr1:93482000-93482600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr1:93482000-93482600	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr1:93482000-93482800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:93482200-93482600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:93482200-93487400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr1:93482400-93482600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr1:93482400-93487000	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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