Variant report

Variant	rs544473700
Chromosome Location	chr2:10536340-10536341
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:10528376..10531284-chr2:10535022..10536565,2	K562	blood:
2	chr2:10526878..10529876-chr2:10534298..10536565,2	K562	blood:
3	chr2:10535680..10537760-chr2:10586889..10589133,2	K562	blood:
4	chr2:10535464..10537756-chr2:10546210..10548957,2	K562	blood:
5	chr2:10533744..10537127-chr2:10539374..10542865,3	K562	blood:
6	chr2:10273219..10275582-chr2:10534083..10536706,2	K562	blood:
7	chr2:10535204..10537517-chr2:10547562..10550495,2	MCF-7	breast:
8	chr2:10259992..10262891-chr2:10534313..10536956,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000115758	Chromatin interaction
ENSG00000206633	Chromatin interaction
ENSG00000257135	Chromatin interaction
ENSG00000272524	Chromatin interaction
ENSG00000171848	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv873641	chr2:10480415-10544640	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv873643	chr2:10535481-10583160	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10523000-10541000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:10523400-10537800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr2:10523600-10539000	Weak transcription	Thymus	Thymus
4	chr2:10526800-10537400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr2:10527200-10542400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:10530000-10540800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:10530400-10537600	Weak transcription	Psoas Muscle	Psoas
8	chr2:10530400-10538800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr2:10530400-10540800	Weak transcription	Colon Smooth Muscle	Colon
10	chr2:10530600-10539800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:10530600-10544400	Weak transcription	Brain Angular Gyrus	brain
12	chr2:10531000-10539800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:10531000-10540600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr2:10531000-10542400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:10531000-10544600	Weak transcription	NHLF	lung
16	chr2:10531200-10539800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr2:10531200-10542400	Weak transcription	HSMMtube	muscle
18	chr2:10531200-10542400	Weak transcription	NH-A	brain
19	chr2:10531200-10544200	Weak transcription	Brain Substantia Nigra	brain
20	chr2:10531400-10539800	Weak transcription	HSMM	muscle
21	chr2:10531400-10541600	Weak transcription	Osteobl	bone
22	chr2:10532800-10537800	Enhancers	Primary T cells fromperipheralblood	blood
23	chr2:10533000-10540200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr2:10533000-10551800	Weak transcription	Ovary	ovary
25	chr2:10533400-10549200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr2:10533600-10536800	Weak transcription	Primary B cells from cord blood	blood
27	chr2:10533600-10537000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr2:10533600-10537000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr2:10533600-10538400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr2:10533600-10539800	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr2:10533600-10539800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr2:10533600-10544200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr2:10533600-10544200	Weak transcription	Fetal Brain Female	brain
34	chr2:10533800-10536400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr2:10533800-10536400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr2:10533800-10537000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr2:10533800-10537400	Weak transcription	Fetal Muscle Leg	muscle
38	chr2:10533800-10537600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr2:10533800-10537800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr2:10533800-10538200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr2:10533800-10538600	Weak transcription	Fetal Intestine Large	intestine
42	chr2:10533800-10538800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr2:10533800-10539400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr2:10533800-10539800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr2:10533800-10539800	Weak transcription	Colonic Mucosa	Colon
46	chr2:10533800-10539800	Weak transcription	Right Atrium	heart
47	chr2:10533800-10539800	Weak transcription	HepG2	liver
48	chr2:10534000-10536400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr2:10534000-10536400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr2:10534000-10536600	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links