Variant report

Variant	rs544476447
Chromosome Location	chr15:83183988-83183989
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PAX5	chr15:83183908-83184184	GM12878	blood:	n/a	n/a
2	ZBTB33	chr15:83183867-83184164	GM12878	blood:	n/a	n/a
3	GATA2	chr15:83183943-83184244	K562	blood:	n/a	n/a
4	POU2F2	chr15:83180473-83184176	GM12878	blood:	n/a	chr15:83182582-83182594 chr15:83182377-83182389 chr15:83184007-83184014 chr15:83184003-83184017
5	IRF4	chr15:83183914-83184183	GM12878	blood:	n/a	n/a
6	PAX5	chr15:83183875-83184254	GM12878	blood:	n/a	n/a
7	USF1	chr15:83183980-83184125	HepG2	liver:	n/a	n/a
8	USF1	chr15:83182521-83184136	A549	lung:	n/a	chr15:83182648-83182664 chr15:83182556-83182572

Variant related genes	Relation type
ENSG00000259472	TF binding region
GOLGA6L21P	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1820106	chr15:82606410-83202155	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv1053566	chr15:82606410-83204498	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv1046321	chr15:82680087-83202155	Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv427965	chr15:82741381-83310525	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	nsv428309	chr15:82741381-83310525	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	esv2758391	chr15:82879646-83310525	Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	esv2760046	chr15:82879646-83310525	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv428645	chr15:83069951-83227151	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv984102	chr15:83073184-83201789	Enhancers	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv469699	chr15:83088908-83207713	Enhancers	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv471686	chr15:83088909-83207713	Enhancers	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
12	esv10828	chr15:83096440-83219640	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv9286	chr15:83097712-83186023	Enhancers	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv1035899	chr15:83108446-83315731	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
15	nsv833071	chr15:83123646-83310510	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
16	esv15860	chr15:83125530-83186393	Enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
17	esv16583	chr15:83154386-83187155	Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
18	esv3444210	chr15:83169297-83214995	Weak transcription Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
19	esv3312436	chr15:83169797-83214445	Weak transcription Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
20	esv3312437	chr15:83169797-83214445	Weak transcription Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
21	esv3384594	chr15:83177247-83214845	Weak transcription Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
22	esv10126	chr15:83177633-83186148	Inactive region	TF binding region	2 gene(s)	inside rSNPs	diseases
23	esv12845	chr15:83177703-83197305	Inactive region	TF binding region	2 gene(s)	inside rSNPs	diseases
24	esv3357136	chr15:83180922-83184270	Inactive region	TF binding region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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