Variant report

Variant	rs544487603
Chromosome Location	chr6:24324591-24324592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601147	chr6:24322287-24326144	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv601148	chr6:24322287-24326596	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv601149	chr6:24322287-24327501	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv601150	chr6:24323858-24326596	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
5	nsv601151	chr6:24323858-24327501	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
6	nsv511339	chr6:24323858-24330240	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24316400-24326800	Weak transcription	Pancreas	Pancrea
2	chr6:24316600-24324800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:24322200-24324800	Enhancers	Fetal Kidney	kidney
4	chr6:24322400-24325400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:24322600-24325000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:24323200-24325000	Enhancers	NH-A	brain
7	chr6:24323600-24324600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:24323600-24324800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:24323600-24325000	Flanking Active TSS	HepG2	liver
10	chr6:24323600-24325600	Enhancers	A549	lung
11	chr6:24323800-24324600	Enhancers	Hela-S3	cervix
12	chr6:24323800-24324800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:24323800-24324800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:24323800-24325400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr6:24324000-24324600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr6:24324000-24324600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:24324000-24324600	Enhancers	HSMMtube	muscle
18	chr6:24324000-24324600	Enhancers	NHEK	skin
19	chr6:24324000-24324800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr6:24324000-24325400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr6:24324200-24324600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:24324200-24324600	Enhancers	HMEC	breast
23	chr6:24324200-24324800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:24324200-24325000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:24324200-24329400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:24324400-24332000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links