Variant report

Variant	rs544520376
Chromosome Location	chr10:98855089-98855090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1037576	chr10:98791099-98873649	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1039568	chr10:98800844-98868329	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1040262	chr10:98805336-98872134	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv895913	chr10:98854410-98884402	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98841200-98869200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:98847400-98855200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:98847400-98860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:98847600-98855400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr10:98848200-98856400	Weak transcription	Thymus	Thymus
6	chr10:98849000-98855600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:98850000-98855200	Weak transcription	Brain Anterior Caudate	brain
8	chr10:98850000-98855400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:98850000-98855400	Weak transcription	Right Atrium	heart
10	chr10:98853200-98858200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:98854000-98855600	Weak transcription	Ovary	ovary
12	chr10:98854200-98855800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr10:98854200-98859400	Enhancers	Fetal Heart	heart
14	chr10:98854400-98856600	Enhancers	Fetal Thymus	thymus
15	chr10:98854800-98855800	Enhancers	Primary T cells fromperipheralblood	blood
16	chr10:98854800-98856000	Bivalent Enhancer	Fetal Muscle Leg	muscle
17	chr10:98854800-98856200	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr10:98854800-98857000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr10:98855000-98855200	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr10:98855000-98855600	Enhancers	Brain Germinal Matrix	brain
21	chr10:98855000-98857400	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr10:98855000-98858400	Enhancers	Fetal Brain Male	brain
23	chr10:98855000-98858600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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