Variant report

Variant	rs544531198
Chromosome Location	chr1:165604622-165604623
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548090	chr1:165602524-165604991	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv548096	chr1:165603866-165604789	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165601600-165605800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:165601600-165608400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:165601600-165615200	Weak transcription	Spleen	Spleen
4	chr1:165601800-165607400	Enhancers	Brain Substantia Nigra	brain
5	chr1:165601800-165615200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:165602000-165605600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:165602000-165622800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr1:165602200-165604800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:165602200-165605000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr1:165602200-165605200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:165602200-165606000	Enhancers	Brain Anterior Caudate	brain
12	chr1:165602200-165624200	Weak transcription	Dnd41	blood
13	chr1:165602400-165604800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr1:165602400-165605200	Enhancers	Fetal Lung	lung
15	chr1:165602400-165606000	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr1:165602400-165606800	Enhancers	Brain Angular Gyrus	brain
17	chr1:165602400-165614400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr1:165602400-165614800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr1:165602400-165615000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr1:165602600-165604800	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr1:165602600-165605000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr1:165602600-165605200	Enhancers	A549	lung
23	chr1:165602600-165605400	Weak transcription	Fetal Stomach	stomach
24	chr1:165602600-165605400	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr1:165602600-165605800	Enhancers	Right Ventricle	heart
26	chr1:165602600-165606000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr1:165602600-165606200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr1:165602600-165606600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr1:165602600-165606600	Weak transcription	HepG2	liver
30	chr1:165602600-165610400	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr1:165602600-165615000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr1:165602800-165604800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr1:165603000-165604800	Enhancers	Left Ventricle	heart
34	chr1:165603000-165606600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr1:165603000-165607000	Weak transcription	Aorta	Aorta
36	chr1:165603000-165614800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr1:165603000-165619800	Weak transcription	HSMMtube	muscle
38	chr1:165603200-165604800	Enhancers	Colonic Mucosa	Colon
39	chr1:165603200-165604800	Enhancers	Fetal Brain Male	brain
40	chr1:165603200-165604800	Enhancers	Ovary	ovary
41	chr1:165603200-165605200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr1:165603200-165605200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr1:165603200-165605400	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr1:165603200-165607200	Enhancers	Brain Cingulate Gyrus	brain
45	chr1:165603200-165608000	Enhancers	Liver	Liver
46	chr1:165603400-165604800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr1:165603400-165606600	Weak transcription	HUVEC	blood vessel
48	chr1:165603600-165604800	Enhancers	H1 Cell Line	embryonic stem cell
49	chr1:165603600-165604800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr1:165603600-165604800	Enhancers	Fetal Heart	heart

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