Variant report

Variant	rs544534075
Chromosome Location	chr11:108077910-108077911
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
3	esv3329933	chr11:108077755-108077933	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108062600-108090800	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:108070600-108089800	Weak transcription	Psoas Muscle	Psoas
3	chr11:108071000-108091600	Weak transcription	Right Atrium	heart
4	chr11:108071400-108092400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:108072800-108081800	ZNF genes & repeats	GM12878-XiMat	blood
6	chr11:108073400-108080200	ZNF genes & repeats	Brain Germinal Matrix	brain
7	chr11:108073600-108079200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
8	chr11:108073800-108079200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:108074000-108078200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
10	chr11:108074000-108079000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:108074000-108079200	ZNF genes & repeats	Fetal Brain Female	brain
12	chr11:108074000-108079400	ZNF genes & repeats	Primary B cells from cord blood	blood
13	chr11:108074000-108082600	ZNF genes & repeats	Fetal Intestine Small	intestine
14	chr11:108074000-108083000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
15	chr11:108074200-108078600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:108074200-108081000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr11:108074200-108082600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:108074400-108079600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
19	chr11:108074400-108082400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr11:108074400-108082600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:108074400-108090800	Weak transcription	Small Intestine	intestine
22	chr11:108074600-108078800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:108074600-108078800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
24	chr11:108074600-108079200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr11:108074600-108079200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:108074600-108079200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
27	chr11:108074600-108079400	ZNF genes & repeats	Thymus	Thymus
28	chr11:108074600-108080000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:108074600-108082800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
30	chr11:108074600-108084000	ZNF genes & repeats	Fetal Stomach	stomach
31	chr11:108074600-108084800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:108074800-108078200	ZNF genes & repeats	Primary T cells from cord blood	blood
33	chr11:108074800-108078600	Strong transcription	H9 Cell Line	embryonic stem cell
34	chr11:108074800-108078800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
35	chr11:108074800-108079000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
36	chr11:108074800-108079200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:108074800-108079200	ZNF genes & repeats	Fetal Muscle Leg	muscle
38	chr11:108074800-108079400	ZNF genes & repeats	Fetal Intestine Large	intestine
39	chr11:108074800-108079800	ZNF genes & repeats	Fetal Thymus	thymus
40	chr11:108074800-108080800	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr11:108074800-108082400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr11:108074800-108082600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
43	chr11:108075000-108078000	ZNF genes & repeats	Fetal Lung	lung
44	chr11:108075000-108078400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
45	chr11:108075000-108078600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:108075000-108078600	ZNF genes & repeats	Placenta	Placenta
47	chr11:108075000-108079000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr11:108075000-108079200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:108075000-108081800	ZNF genes & repeats	Dnd41	blood
50	chr11:108075000-108083600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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