Variant report
| Variant | rs544567664 |
|---|---|
| Chromosome Location | chr11:4927080-4927081 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:6)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:6 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFK | chr11:4926916-4927175 | HepG2 | liver: | n/a | n/a |
| 2 | MAFF | chr11:4926947-4927181 | HepG2 | liver: | n/a | n/a |
| 3 | MAFK | chr11:4926919-4927192 | IMR90 | lung: | n/a | n/a |
| 4 | MAFF | chr11:4926928-4927116 | K562 | blood: | n/a | n/a |
| 5 | MAFK | chr11:4927065-4927100 | K562 | blood: | n/a | n/a |
| 6 | MAFK | chr11:4926882-4927214 | HepG2 | liver: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| OR51A7 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054847 | chr11:4642875-5200656 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 72 gene(s) | inside rSNPs | diseases |
| 2 | esv2758254 | chr11:4907893-5135331 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 42 gene(s) | inside rSNPs | diseases |
| 3 | esv2759799 | chr11:4907893-5135331 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 42 gene(s) | inside rSNPs | diseases |
| 4 | nsv896917 | chr11:4917089-4935470 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv521088 | chr11:4925933-4928866 | Weak transcription | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
