Variant report

Variant	rs544583079
Chromosome Location	chr15:76216890-76216891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76211169..76212903-chr15:76216124..76218574,2	K562	blood:
2	chr15:76134738..76137531-chr15:76213664..76217396,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140367	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1053717	chr15:76196674-76314542	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1040053	chr15:76197988-76314542	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv984193	chr15:76214943-76221739	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76197800-76217400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr15:76198000-76231600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:76198200-76232200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:76198400-76225000	Weak transcription	Fetal Kidney	kidney
5	chr15:76198600-76217000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr15:76198600-76226400	Weak transcription	Fetal Brain Male	brain
7	chr15:76203800-76230200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:76205400-76217200	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr15:76205400-76217200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr15:76205400-76218600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr15:76206800-76218800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr15:76207000-76226600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:76207000-76228200	Weak transcription	Brain Substantia Nigra	brain
14	chr15:76207000-76228200	Weak transcription	Colonic Mucosa	Colon
15	chr15:76207000-76232000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr15:76207200-76225000	Weak transcription	Spleen	Spleen
17	chr15:76207200-76226600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:76207400-76218000	Weak transcription	Brain Germinal Matrix	brain
19	chr15:76207400-76222200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr15:76207400-76222200	Weak transcription	Brain Angular Gyrus	brain
21	chr15:76207400-76223000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr15:76208000-76222400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr15:76208400-76232800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:76209000-76225000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:76209000-76225000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr15:76209600-76217200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr15:76209600-76219600	Strong transcription	K562	blood
28	chr15:76209800-76222800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr15:76210200-76222200	Strong transcription	Primary T cells from cord blood	blood
30	chr15:76210800-76225000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr15:76211400-76240200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr15:76212000-76218200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr15:76212200-76217800	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr15:76212200-76222600	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr15:76212400-76223400	Strong transcription	HepG2	liver
36	chr15:76212800-76218800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr15:76212800-76219000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr15:76213000-76221800	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr15:76213000-76222200	Weak transcription	Brain Anterior Caudate	brain
40	chr15:76213000-76224200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr15:76213400-76217600	Genic enhancers	NHEK	skin
42	chr15:76213400-76217800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr15:76213400-76219400	Weak transcription	Primary B cells from peripheral blood	blood
44	chr15:76213600-76219800	Enhancers	Fetal Heart	heart
45	chr15:76214000-76222400	Weak transcription	Placenta	Placenta
46	chr15:76214200-76217000	Strong transcription	Thymus	Thymus
47	chr15:76214200-76217600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr15:76214400-76217200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr15:76214400-76217200	Genic enhancers	A549	lung
50	chr15:76214600-76217200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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