Variant report

Variant	rs544617
Chromosome Location	chr1:165881250-165881251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165599377..165602335-chr1:165879611..165882168,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143198	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10800165	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12080800	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs12125493	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs3762365	0.84[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3790659	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3806333	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs485338	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs492467	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs495529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs506813	0.90[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs536109	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7519919	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7543127	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165854600-165883000	Weak transcription	Colon Smooth Muscle	Colon
2	chr1:165858600-165902400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:165870200-165882800	Weak transcription	Fetal Brain Male	brain
4	chr1:165871000-165883200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr1:165871800-165882200	Strong transcription	Fetal Brain Female	brain
6	chr1:165872400-165883200	Weak transcription	Brain Anterior Caudate	brain
7	chr1:165872400-165883200	Weak transcription	Brain Substantia Nigra	brain
8	chr1:165872800-165883400	Weak transcription	Fetal Kidney	kidney
9	chr1:165874000-165881800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:165875000-165881400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:165875400-165881400	Strong transcription	Brain Germinal Matrix	brain
12	chr1:165875800-165883400	Weak transcription	Fetal Lung	lung
13	chr1:165876000-165883400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr1:165876400-165884200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr1:165877000-165881600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr1:165877000-165882000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:165877000-165882200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr1:165877000-165883400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr1:165877200-165883400	Weak transcription	Brain Angular Gyrus	brain
20	chr1:165878000-165883000	Weak transcription	Hela-S3	cervix
21	chr1:165878000-165883600	Weak transcription	Thymus	Thymus
22	chr1:165878600-165883000	Weak transcription	NHDF-Ad	bronchial
23	chr1:165878600-165883400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr1:165879200-165881800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:165879200-165881800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr1:165879200-165881800	Genic enhancers	Fetal Intestine Small	intestine
27	chr1:165879200-165883000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr1:165879200-165886200	Enhancers	Stomach Mucosa	stomach
29	chr1:165879400-165881400	Weak transcription	Primary B cells from cord blood	blood
30	chr1:165879400-165884400	Weak transcription	Pancreas	Pancrea
31	chr1:165879400-165894600	Weak transcription	Aorta	Aorta
32	chr1:165879600-165883000	Weak transcription	Psoas Muscle	Psoas
33	chr1:165879800-165882000	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr1:165879800-165883000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr1:165879800-165883200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr1:165879800-165883200	Weak transcription	K562	blood
37	chr1:165879800-165883800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr1:165879800-165885000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr1:165880000-165881600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr1:165880000-165882200	Enhancers	Esophagus	oesophagus
41	chr1:165880000-165882800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr1:165880000-165883000	Weak transcription	Brain Cingulate Gyrus	brain
43	chr1:165880000-165883400	Weak transcription	NH-A	brain
44	chr1:165880000-165885200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr1:165880000-165888400	Weak transcription	Spleen	Spleen
46	chr1:165880200-165881800	Weak transcription	Brain Hippocampus Middle	brain
47	chr1:165880200-165882200	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr1:165880200-165882200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr1:165880200-165882400	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr1:165880200-165883200	Weak transcription	A549	lung

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