Variant report

Variant	rs544622478
Chromosome Location	chr3:113187427-113187428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:113184639..113186627-chr3:113186960..113188718,2	MCF-7	breast:
2	chr3:113184124..113185846-chr3:113185911..113187476,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3416440	chr3:113187295-113187548	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3406798	chr3:113187412-113189360	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113146000-113191000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr3:113160200-113190000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:113160400-113188800	Weak transcription	Colonic Mucosa	Colon
4	chr3:113160400-113191200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:113160400-113192800	Weak transcription	Stomach Mucosa	stomach
6	chr3:113160600-113188600	Weak transcription	Psoas Muscle	Psoas
7	chr3:113160600-113190600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:113160600-113203800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:113160800-113187600	Weak transcription	NHLF	lung
10	chr3:113160800-113189400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:113160800-113189400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:113160800-113189600	Weak transcription	NHEK	skin
13	chr3:113160800-113203800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:113160800-113203800	Weak transcription	Aorta	Aorta
15	chr3:113160800-113224800	Weak transcription	Placenta	Placenta
16	chr3:113160800-113232600	Weak transcription	Right Ventricle	heart
17	chr3:113161000-113189600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr3:113161000-113189600	Weak transcription	Brain Substantia Nigra	brain
19	chr3:113161000-113190800	Weak transcription	K562	blood
20	chr3:113161400-113192200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr3:113166200-113188800	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr3:113166600-113203800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr3:113169800-113191600	Weak transcription	Fetal Brain Male	brain
24	chr3:113172600-113203800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr3:113172800-113232800	Weak transcription	HSMMtube	muscle
26	chr3:113173800-113190200	Weak transcription	Fetal Heart	heart
27	chr3:113174600-113190200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr3:113175000-113190600	Weak transcription	Brain Germinal Matrix	brain
29	chr3:113176400-113233200	Weak transcription	Gastric	stomach
30	chr3:113177400-113225800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr3:113177600-113224400	Weak transcription	Spleen	Spleen
32	chr3:113179600-113188200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr3:113179600-113189600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr3:113179600-113191200	Weak transcription	Brain Angular Gyrus	brain
35	chr3:113179600-113192200	Weak transcription	Brain Cingulate Gyrus	brain
36	chr3:113179600-113192600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr3:113179600-113204000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr3:113179600-113215200	Weak transcription	HMEC	breast
39	chr3:113179600-113217200	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr3:113179600-113232400	Weak transcription	Rectal Smooth Muscle	rectum
41	chr3:113179600-113232800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr3:113180800-113189800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr3:113181000-113187800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr3:113181000-113189000	Strong transcription	Fetal Intestine Large	intestine
45	chr3:113182000-113188800	Weak transcription	Brain Anterior Caudate	brain
46	chr3:113182000-113191400	Weak transcription	Fetal Muscle Leg	muscle
47	chr3:113182000-113203800	Weak transcription	Esophagus	oesophagus
48	chr3:113182000-113203800	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr3:113183400-113189000	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr3:113183800-113188600	Weak transcription	Primary B cells from cord blood	blood

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