Variant report

Variant	rs544622816
Chromosome Location	chr11:77162800-77162801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77161236..77163004-chr11:77181635..77184038,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1037724	chr11:77061945-77250391	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv541091	chr11:77061945-77250391	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3437433	chr11:77101280-77291686	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv3462863	chr11:77162507-77163071	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3462852	chr11:77162568-77163032	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3462841	chr11:77162575-77163012	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3462874	chr11:77162623-77162964	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77142200-77164800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:77149200-77165400	Weak transcription	Ovary	ovary
3	chr11:77152800-77166400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:77153600-77168600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:77155400-77181400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:77157000-77168400	Weak transcription	Small Intestine	intestine
7	chr11:77158000-77162800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:77158000-77162800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr11:77158200-77168600	Weak transcription	Stomach Mucosa	stomach
10	chr11:77158400-77169800	Weak transcription	Fetal Intestine Large	intestine
11	chr11:77158600-77164000	Weak transcription	Fetal Intestine Small	intestine
12	chr11:77159800-77168400	Weak transcription	Fetal Brain Female	brain
13	chr11:77160200-77169400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:77160600-77164800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:77160600-77165800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:77160600-77178000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:77160800-77167000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:77161000-77170200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:77161200-77163400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr11:77161200-77167400	Weak transcription	Brain Hippocampus Middle	brain
21	chr11:77161200-77179200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr11:77161400-77163000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:77161400-77163000	Enhancers	Placenta	Placenta
24	chr11:77162000-77163600	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr11:77162000-77165400	Weak transcription	Primary T cells from cord blood	blood
26	chr11:77162000-77165800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr11:77162200-77163800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:77162400-77164000	Enhancers	GM12878-XiMat	blood
29	chr11:77162400-77165000	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr11:77162400-77166800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:77162400-77167000	Weak transcription	Primary B cells from cord blood	blood
32	chr11:77162400-77167200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:77162400-77167400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:77162400-77168000	Weak transcription	Duodenum Mucosa	Duodenum
35	chr11:77162600-77163000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr11:77162600-77163200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:77162600-77163200	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr11:77162600-77163200	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr11:77162600-77165000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr11:77162600-77165600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr11:77162600-77165600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:77162600-77165800	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr11:77162600-77166200	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr11:77162600-77166400	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr11:77162800-77163200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr11:77162800-77163400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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