Variant report

Variant	rs544638225
Chromosome Location	chr2:98419917-98419918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531382	chr2:98250628-98457616	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv526360	chr2:98403683-98814054	Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv521568	chr2:98403683-98826203	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv819283	chr2:98418819-98421568	Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98378600-98421400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr2:98383200-98420200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr2:98387800-98438200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr2:98398800-98421000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:98399600-98429600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr2:98401400-98422600	Strong transcription	Primary B cells from cord blood	blood
7	chr2:98401600-98422400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:98402000-98423200	Strong transcription	Primary B cells from peripheral blood	blood
9	chr2:98402000-98440400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr2:98402200-98422200	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr2:98402200-98422600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:98402400-98428600	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr2:98402600-98422200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr2:98402600-98422600	Strong transcription	Liver	Liver
15	chr2:98403200-98422400	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr2:98403600-98422600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:98405800-98459600	Weak transcription	Stomach Mucosa	stomach
18	chr2:98406200-98427200	Weak transcription	K562	blood
19	chr2:98406400-98469200	Weak transcription	A549	lung
20	chr2:98407400-98422000	Strong transcription	Adipose Nuclei	Adipose
21	chr2:98407400-98422200	Strong transcription	Duodenum Mucosa	Duodenum
22	chr2:98407800-98422000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr2:98409000-98425000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr2:98409200-98423600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr2:98409400-98423400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr2:98409400-98423600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr2:98409400-98423600	Weak transcription	Psoas Muscle	Psoas
28	chr2:98409400-98484200	Weak transcription	HUVEC	blood vessel
29	chr2:98409600-98429800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr2:98409800-98425000	Weak transcription	Fetal Brain Female	brain
31	chr2:98409800-98485000	Weak transcription	Hela-S3	cervix
32	chr2:98410000-98423400	Weak transcription	Right Ventricle	heart
33	chr2:98410000-98424800	Weak transcription	Brain Germinal Matrix	brain
34	chr2:98410000-98424800	Weak transcription	Esophagus	oesophagus
35	chr2:98410000-98425200	Weak transcription	Gastric	stomach
36	chr2:98410000-98425400	Weak transcription	Pancreas	Pancrea
37	chr2:98410000-98425800	Weak transcription	NH-A	brain
38	chr2:98410000-98427000	Weak transcription	Brain Angular Gyrus	brain
39	chr2:98410000-98427200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr2:98410000-98427200	Weak transcription	Brain Substantia Nigra	brain
41	chr2:98410000-98427400	Weak transcription	HSMMtube	muscle
42	chr2:98410000-98427800	Weak transcription	Spleen	Spleen
43	chr2:98410000-98435800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr2:98410000-98446000	Weak transcription	Colonic Mucosa	Colon
45	chr2:98410000-98456200	Weak transcription	Thymus	Thymus
46	chr2:98410000-98456800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr2:98410000-98456800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr2:98410000-98457400	Weak transcription	Small Intestine	intestine
49	chr2:98410200-98427200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr2:98410800-98432000	Weak transcription	Fetal Intestine Small	intestine

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