Variant report

Variant	rs544642120
Chromosome Location	chr6:128432960-128432961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128427870..128430111-chr6:128432750..128435472,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv604643	chr6:128359362-128493991	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604644	chr6:128394889-128486139	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv886650	chr6:128403745-128513395	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1031827	chr6:128418702-128497881	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2763955	chr6:128418714-128436415	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv604645	chr6:128421762-128437136	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv528869	chr6:128421762-128496557	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv604646	chr6:128421762-128531651	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv604647	chr6:128421762-128547177	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv16561	chr6:128432770-128437573	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128375000-128433800	Weak transcription	Aorta	Aorta
2	chr6:128401800-128433600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:128404000-128438000	Weak transcription	Fetal Thymus	thymus
4	chr6:128406600-128433000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:128411000-128433600	Weak transcription	HSMMtube	muscle
6	chr6:128411200-128433800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:128411200-128433800	Weak transcription	Fetal Stomach	stomach
8	chr6:128411200-128433800	Weak transcription	Ovary	ovary
9	chr6:128411600-128445600	Weak transcription	HepG2	liver
10	chr6:128419800-128434800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:128419800-128455600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:128425000-128452600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:128425200-128433600	Weak transcription	Right Atrium	heart
14	chr6:128425200-128435200	Weak transcription	Gastric	stomach
15	chr6:128428000-128452000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:128431400-128433800	Enhancers	Brain Substantia Nigra	brain
17	chr6:128431800-128433400	Enhancers	Liver	Liver
18	chr6:128431800-128433800	Enhancers	Fetal Heart	heart
19	chr6:128432000-128433400	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr6:128432000-128433600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:128432000-128433600	Enhancers	Colon Smooth Muscle	Colon
22	chr6:128432200-128433400	Enhancers	Brain Anterior Caudate	brain
23	chr6:128432200-128433600	Weak transcription	Psoas Muscle	Psoas
24	chr6:128432200-128433600	Weak transcription	Right Ventricle	heart
25	chr6:128432200-128433800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr6:128432200-128433800	Weak transcription	Fetal Brain Male	brain
27	chr6:128432200-128448200	Weak transcription	Primary B cells from cord blood	blood
28	chr6:128432400-128433400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr6:128432400-128433600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:128432400-128433600	Enhancers	Brain Hippocampus Middle	brain
31	chr6:128432400-128433600	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr6:128432400-128433800	Enhancers	Fetal Lung	lung
33	chr6:128432600-128433200	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr6:128432600-128433200	Weak transcription	Brain Angular Gyrus	brain
35	chr6:128432600-128433600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr6:128432800-128433000	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr6:128432800-128433200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:128432800-128433400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr6:128432800-128433600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:128432800-128433600	Enhancers	Fetal Intestine Small	intestine
41	chr6:128432800-128433800	Enhancers	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links