Variant report

Variant	rs544651582
Chromosome Location	chr6:140019638-140019639
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv823851	chr6:140019537-140024421	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140015800-140019800	Weak transcription	Liver	Liver
2	chr6:140017000-140019800	Weak transcription	Adipose Nuclei	Adipose
3	chr6:140017600-140020000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:140019400-140021000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:140019600-140019800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:140019600-140019800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:140019600-140019800	Enhancers	Fetal Intestine Large	intestine
8	chr6:140019600-140020600	Enhancers	Fetal Intestine Small	intestine
9	chr6:140019600-140020800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr6:140019600-140020800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr6:140019600-140021200	Enhancers	Fetal Lung	lung
12	chr6:140019600-140022000	Enhancers	Fetal Kidney	kidney
13	chr6:140019600-140022600	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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