Variant report

Variant	rs544653458
Chromosome Location	chr10:94607326-94607327
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD2	chr10:94606836-94607344	Hela-S3	cervix:	n/a	n/a
2	MXI1	chr10:94607292-94609789	SK-N-SH	brain:	n/a	n/a
3	MAZ	chr10:94607233-94607595	HepG2	liver:	n/a	n/a
4	FOXA1	chr10:94607061-94607621	HepG2	liver:	n/a	n/a
5	STAT3	chr10:94606871-94607458	Hela-S3	cervix:	n/a	chr10:94607360-94607368
6	EP300	chr10:94606860-94607405	Hela-S3	cervix:	n/a	chr10:94607337-94607351
7	POLR2A	chr10:94606677-94607609	K562	blood:	n/a	n/a
8	CEBPB	chr10:94606896-94607586	ECC-1	luminal epithelium:	n/a	chr10:94607150-94607161
9	E2F4	chr10:94607321-94608436	MCF10A-Er-Src	breast:	n/a	chr10:94608137-94608151 chr10:94608122-94608134 chr10:94608123-94608134
10	MAFK	chr10:94606800-94607338	K562	blood:	n/a	n/a
11	MAX	chr10:94606939-94607600	NB4	blood:	n/a	n/a
12	RCOR1	chr10:94606771-94609165	Hela-S3	cervix:	n/a	n/a
13	MYC	chr10:94606864-94607441	NB4	blood:	n/a	n/a
14	JUND	chr10:94606767-94607524	Hela-S3	cervix:	n/a	chr10:94607262-94607273
15	FOS	chr10:94606800-94607328	MCF10A-Er-Src	breast:	n/a	chr10:94607262-94607273
16	TCF7L2	chr10:94606743-94607647	Hela-S3	cervix:	n/a	chr10:94607365-94607381
17	CEBPB	chr10:94606962-94607591	HepG2	liver:	n/a	chr10:94607150-94607161
18	CEBPB	chr10:94606923-94607339	K562	blood:	n/a	chr10:94607150-94607161
19	CEBPB	chr10:94606965-94607347	A549	lung:	n/a	chr10:94607150-94607161
20	CEBPB	chr10:94606828-94607456	A549	lung:	n/a	chr10:94607150-94607161
21	MAX	chr10:94606849-94607496	Hela-S3	cervix:	n/a	n/a
22	JUND	chr10:94606785-94607395	K562	blood:	n/a	chr10:94607262-94607273
23	CEBPD	chr10:94606891-94607406	K562	blood:	n/a	chr10:94607151-94607162
24	FOXA2	chr10:94607070-94607458	HepG2	liver:	n/a	n/a
25	CEBPB	chr10:94606873-94607427	K562	blood:	n/a	chr10:94607150-94607161
26	CEBPB	chr10:94606953-94607368	IMR90	lung:	n/a	chr10:94607150-94607161
27	EP300	chr10:94607107-94607651	HepG2	liver:	n/a	chr10:94607337-94607351
28	CEBPB	chr10:94606808-94607680	Hela-S3	cervix:	n/a	chr10:94607150-94607161
29	CEBPB	chr10:94606993-94607332	H1-hESC	embryonic stem cell:	n/a	chr10:94607150-94607161
30	CEBPB	chr10:94606849-94607535	MCF-7	breast:	n/a	chr10:94607150-94607161
31	POLR2A	chr10:94606962-94607510	HUVEC	blood vessel:	n/a	n/a
32	POLR2A	chr10:94607195-94607377	Hela-S3	cervix:	n/a	n/a
33	RAD21	chr10:94606903-94607390	Hela-S3	cervix:	n/a	n/a
34	CEBPB	chr10:94607015-94607408	HepG2	liver:	n/a	chr10:94607150-94607161
35	MAZ	chr10:94607011-94607427	K562	blood:	n/a	n/a
36	ARID3A	chr10:94607190-94607759	HepG2	liver:	n/a	n/a
37	CEBPB	chr10:94606974-94607336	HepG2	liver:	n/a	chr10:94607150-94607161
38	MYBL2	chr10:94607114-94607748	HepG2	liver:	n/a	n/a
39	MXI1	chr10:94606818-94607421	Hela-S3	cervix:	n/a	n/a
40	FOXA1	chr10:94607102-94607552	HepG2	liver:	n/a	n/a
41	HA-E2F1	chr10:94607325-94609231	MCF-7	breast:	n/a	chr10:94608137-94608151 chr10:94608122-94608134
42	RXRA	chr10:94607188-94607788	HepG2	liver:	n/a	n/a
43	UBTF	chr10:94607142-94607403	K562	blood:	n/a	n/a
44	FOXA1	chr10:94607155-94607642	HepG2	liver:	n/a	n/a
45	CEBPB	chr10:94606889-94607425	MCF-7	breast:	n/a	chr10:94607150-94607161
46	GTF2F1	chr10:94606831-94607384	Hela-S3	cervix:	n/a	n/a
47	CEBPB	chr10:94606886-94607441	K562	blood:	n/a	chr10:94607150-94607161
48	POLR2A	chr10:94607148-94607346	MCF10A-Er-Src	breast:	n/a	n/a
49	MYC	chr10:94606914-94607333	MCF10A-Er-Src	breast:	n/a	n/a
50	KAP1	chr10:94606529-94607496	HEK293	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:94332956..94335217-chr10:94607050..94609174,2	MCF-7	breast:
2	chr10:94351135..94353608-chr10:94605711..94608172,2	K562	blood:
3	chr10:94607070..94611530-chr10:94637347..94641279,5	MCF-7	breast:
4	chr10:94448193..94452899-chr10:94604769..94609293,6	K562	blood:
5	chr10:94607085..94609622-chr3:12881442..12883571,2	MCF-7	breast:
6	chr10:94351156..94354361-chr10:94606648..94609927,3	MCF-7	breast:
7	chr10:94604476..94607331-chr10:94608009..94611387,4	K562	blood:

Variant related genes	Relation type
EXOC6	TF binding region
ENSG00000138160	Chromatin interaction
ENSG00000144713	Chromatin interaction
ENSG00000119912	Chromatin interaction
ENSG00000225118	Chromatin interaction
ENSG00000138190	Chromatin interaction
ENSG00000207496	Chromatin interaction
ENSG00000152804	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3357649	chr10:94607197-94609745	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94596800-94607800	Weak transcription	HSMMtube	muscle
2	chr10:94599400-94607400	Weak transcription	Spleen	Spleen
3	chr10:94599600-94607600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:94600600-94607800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:94602600-94607600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr10:94602800-94607400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr10:94603200-94607400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr10:94603200-94607400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:94603400-94607400	Weak transcription	Adipose Nuclei	Adipose
10	chr10:94604200-94607400	Weak transcription	Fetal Muscle Leg	muscle
11	chr10:94604200-94607400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:94604200-94607600	Weak transcription	Brain Hippocampus Middle	brain
13	chr10:94605400-94608000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr10:94605600-94607600	Enhancers	Primary B cells from peripheral blood	blood
15	chr10:94605800-94607400	Enhancers	HepG2	liver
16	chr10:94606200-94607400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:94606200-94607400	Weak transcription	Fetal Thymus	thymus
18	chr10:94606200-94607800	Weak transcription	Thymus	Thymus
19	chr10:94606600-94607400	Enhancers	Primary hematopoietic stem cells	blood
20	chr10:94606600-94607400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:94606600-94607600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:94606600-94607800	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr10:94606600-94607800	Enhancers	GM12878-XiMat	blood
24	chr10:94606800-94607400	Weak transcription	Lung	lung
25	chr10:94606800-94607600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr10:94606800-94607600	Genic enhancers	K562	blood
27	chr10:94606800-94608000	Flanking Active TSS	Hela-S3	cervix
28	chr10:94607000-94607400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr10:94607000-94607600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:94607000-94607600	Enhancers	Fetal Intestine Large	intestine
31	chr10:94607000-94607600	Enhancers	Dnd41	blood
32	chr10:94607000-94607800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:94607000-94607800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:94607000-94607800	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr10:94607000-94607800	Bivalent Enhancer	NHEK	skin
36	chr10:94607200-94607400	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:94607200-94607400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr10:94607200-94607400	Active TSS	Duodenum Mucosa	Duodenum
39	chr10:94607200-94607600	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr10:94607200-94607600	Enhancers	Primary T cells from cord blood	blood
41	chr10:94607200-94607600	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr10:94607200-94607600	Enhancers	Liver	Liver
43	chr10:94607200-94607600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr10:94607200-94607600	Enhancers	Fetal Intestine Small	intestine
45	chr10:94607200-94607600	Enhancers	Placenta	Placenta
46	chr10:94607200-94607600	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr10:94607200-94607600	Enhancers	A549	lung
48	chr10:94607200-94607600	Enhancers	HSMM	muscle
49	chr10:94607200-94607600	Enhancers	Osteobl	bone
50	chr10:94607200-94607800	Enhancers	HMEC	breast

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