Variant report

Variant	rs544673865
Chromosome Location	chr3:42857545-42857546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr3:42857467-42857667	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr3:42857475-42857784	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr3:42857332-42857674	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr3:42857354-42857669	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr3:42857307-42857755	MCF10A-Er-Src	breast:	n/a	n/a
6	KAP1	chr3:42856326-42857806	U2OS	brain:	n/a	n/a
7	EBF1	chr3:42856728-42857597	GM12878	blood:	n/a	chr3:42856876-42856889 chr3:42856877-42856887 chr3:42857360-42857371 chr3:42856878-42856887 chr3:42856878-42856887 chr3:42857290-42857301 chr3:42857292-42857302
8	KAP1	chr3:42856175-42857851	HEK293	kidney:	n/a	n/a
9	STAT3	chr3:42857466-42857849	MCF10A-Er-Src	breast:	n/a	n/a
10	TBP	chr3:42857461-42857711	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:42842006..42848504-chr3:42854036..42858354,7	K562	blood:
2	chr3:42841845..42845236-chr3:42855285..42858253,3	K562	blood:

Variant related genes	Relation type
ACKR2	TF binding region
ENSG00000181061	Chromatin interaction
ENSG00000144648	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847016	chr3:42855765-42880490	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42853200-42858600	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr3:42853800-42861000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:42853800-42861200	Weak transcription	Fetal Intestine Large	intestine
4	chr3:42853800-42862200	Weak transcription	Fetal Intestine Small	intestine
5	chr3:42854200-42861200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:42854800-42858000	Enhancers	Fetal Heart	heart
7	chr3:42855000-42857600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr3:42855800-42857800	Enhancers	HepG2	liver
9	chr3:42856000-42857600	Enhancers	Stomach Mucosa	stomach
10	chr3:42856000-42857800	Enhancers	Hela-S3	cervix
11	chr3:42856200-42858000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:42856400-42857800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:42856400-42857800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:42856400-42858200	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr3:42856600-42857600	Enhancers	Duodenum Mucosa	Duodenum
16	chr3:42856800-42857800	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr3:42856800-42861000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:42857000-42858600	Weak transcription	Placenta	Placenta
19	chr3:42857000-42861000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:42857000-42869800	Weak transcription	Colonic Mucosa	Colon
21	chr3:42857200-42860600	Weak transcription	Fetal Kidney	kidney
22	chr3:42857200-42861000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr3:42857400-42860800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr3:42857400-42861000	Weak transcription	Liver	Liver
25	chr3:42857400-42861200	Weak transcription	HMEC	breast
26	chr3:42857400-42861200	Weak transcription	NHEK	skin

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