Variant report

Variant	rs544735647
Chromosome Location	chr19:41633303-41633304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:41631544..41633545-chr19:41769821..41772768,2	MCF-7	breast:
2	chr19:41323756..41325875-chr19:41632979..41635488,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105323	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv3391909	chr19:41632754-41688263	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41627200-41633800	Weak transcription	Esophagus	oesophagus
2	chr19:41627200-41634000	Weak transcription	Pancreas	Pancrea
3	chr19:41627400-41641600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr19:41628000-41633600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr19:41628200-41633800	Weak transcription	Gastric	stomach
6	chr19:41630200-41634000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr19:41630800-41633600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr19:41631000-41633600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr19:41632400-41633800	Enhancers	Primary T cells fromperipheralblood	blood
10	chr19:41632400-41634800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr19:41632800-41633600	Enhancers	A549	lung
12	chr19:41632800-41633800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr19:41632800-41634200	Enhancers	Liver	Liver
14	chr19:41632800-41634600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr19:41632800-41634800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr19:41632800-41634800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr19:41632800-41634800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr19:41632800-41634800	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr19:41632800-41634800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr19:41632800-41634800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr19:41632800-41634800	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr19:41632800-41634800	Enhancers	Placenta	Placenta
23	chr19:41632800-41635000	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr19:41633000-41633800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr19:41633200-41633400	Enhancers	H1 Cell Line	embryonic stem cell
26	chr19:41633200-41633400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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