Variant report

Variant	rs544780047
Chromosome Location	chr4:160143691-160143692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016150	chr4:159995816-160165156	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830129	chr4:160061694-160270760	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	esv1795614	chr4:160142544-160161916	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160102000-160149000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:160107000-160145600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:160115600-160149200	Weak transcription	Esophagus	oesophagus
4	chr4:160116600-160145200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr4:160116800-160148200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:160119000-160148600	Weak transcription	Small Intestine	intestine
7	chr4:160125200-160148600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr4:160127800-160148600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:160128000-160148600	Weak transcription	NHDF-Ad	bronchial
10	chr4:160128400-160148600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:160128600-160148400	Weak transcription	Stomach Mucosa	stomach
12	chr4:160129200-160148200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr4:160130800-160148600	Weak transcription	Ovary	ovary
14	chr4:160132400-160148600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:160132400-160148600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:160132400-160149200	Weak transcription	Brain Germinal Matrix	brain
17	chr4:160132800-160148000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:160133400-160171600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr4:160134200-160156600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:160138000-160145400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr4:160138000-160156000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr4:160138800-160148600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr4:160140800-160144000	Enhancers	Fetal Heart	heart
24	chr4:160141000-160143800	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr4:160141200-160145600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:160141400-160144800	Weak transcription	Liver	Liver
27	chr4:160141400-160145200	Weak transcription	HepG2	liver
28	chr4:160141400-160145400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr4:160141400-160148600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr4:160141400-160148800	Weak transcription	Fetal Muscle Leg	muscle
31	chr4:160141800-160148600	Weak transcription	Pancreas	Pancrea
32	chr4:160142200-160144000	Enhancers	Brain Angular Gyrus	brain
33	chr4:160142400-160143800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr4:160142600-160143800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr4:160142600-160148600	Weak transcription	Gastric	stomach
36	chr4:160142600-160148600	Weak transcription	Left Ventricle	heart
37	chr4:160142600-160148800	Weak transcription	Psoas Muscle	Psoas
38	chr4:160142800-160143800	Enhancers	Brain Anterior Caudate	brain
39	chr4:160142800-160143800	Enhancers	Brain Substantia Nigra	brain
40	chr4:160142800-160144000	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr4:160143000-160145200	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr4:160143200-160143800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr4:160143200-160143800	Enhancers	Fetal Intestine Small	intestine
44	chr4:160143200-160143800	Enhancers	Rectal Smooth Muscle	rectum
45	chr4:160143200-160144000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr4:160143200-160144000	Enhancers	Brain Hippocampus Middle	brain
47	chr4:160143200-160144000	Enhancers	Fetal Intestine Large	intestine
48	chr4:160143400-160143800	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr4:160143400-160143800	Enhancers	Fetal Kidney	kidney
50	chr4:160143400-160148600	Weak transcription	Fetal Brain Female	brain

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