Variant report

Variant	rs544808420
Chromosome Location	chr5:15690071-15690072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830214	chr5:15589809-15791032	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3507774	chr5:15593461-15822407	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3507776	chr5:15593461-15822407	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028089	chr5:15636285-15883910	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv537676	chr5:15636285-15883910	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1024248	chr5:15638067-15863583	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv537677	chr5:15638067-15863583	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
13	nsv597263	chr5:15672137-15720478	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv461983	chr5:15674635-15720106	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv597264	chr5:15674635-15720106	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	esv2757107	chr5:15678556-15810987	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	esv2759327	chr5:15678556-15810987	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv432718	chr5:15688927-15723346	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15675200-15693000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:15677000-15690800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:15682400-15690800	Weak transcription	Aorta	Aorta
4	chr5:15684000-15695200	Weak transcription	HUVEC	blood vessel
5	chr5:15684600-15691200	Weak transcription	Fetal Stomach	stomach
6	chr5:15684600-15694000	Weak transcription	Fetal Kidney	kidney
7	chr5:15684800-15693000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr5:15685000-15690200	Weak transcription	NHDF-Ad	bronchial
9	chr5:15686400-15690800	Weak transcription	Ovary	ovary
10	chr5:15686600-15690200	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:15686600-15694400	Weak transcription	Fetal Lung	lung
12	chr5:15687600-15690800	Weak transcription	Right Ventricle	heart
13	chr5:15687800-15690800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr5:15687800-15690800	Weak transcription	Right Atrium	heart
15	chr5:15687800-15691000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr5:15687800-15691200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr5:15687800-15691200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr5:15687800-15691200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:15687800-15691400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr5:15687800-15694200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr5:15687800-15694200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr5:15688000-15690800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr5:15688000-15690800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr5:15688000-15690800	Weak transcription	Brain Anterior Caudate	brain
25	chr5:15688000-15694200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr5:15688200-15690800	Weak transcription	Brain Angular Gyrus	brain
27	chr5:15688200-15690800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr5:15688200-15691200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr5:15688400-15704200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr5:15688600-15690800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr5:15688800-15690600	Weak transcription	Brain Hippocampus Middle	brain
32	chr5:15689000-15690800	Weak transcription	Brain Substantia Nigra	brain
33	chr5:15689200-15690800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr5:15689200-15693000	Weak transcription	Lung	lung
35	chr5:15689400-15690800	Weak transcription	Left Ventricle	heart
36	chr5:15689400-15691200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr5:15689600-15691000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr5:15690000-15690200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr5:15690000-15690200	Enhancers	Adipose Nuclei	Adipose
40	chr5:15690000-15690200	Enhancers	Fetal Heart	heart
41	chr5:15690000-15692200	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links