Variant report

Variant	rs544933892
Chromosome Location	chr2:54188333-54188334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:54178658..54180382-chr2:54186719..54189310,2	K562	blood:
2	chr2:54188266..54193064-chr2:54193123..54200059,18	K562	blood:
3	chr2:54184186..54188575-chr2:54196120..54198955,4	MCF-7	breast:
4	chr2:54182457..54184088-chr2:54186871..54190215,3	K562	blood:
5	chr2:54182588..54184122-chr2:54186046..54188371,2	K562	blood:
6	chr2:54186673..54188652-chr2:54193510..54195241,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000068878	Chromatin interaction
ENSG00000170634	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762257	chr2:54187617-54192015	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54151000-54189800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:54153400-54194600	Weak transcription	Fetal Brain Male	brain
3	chr2:54156600-54190000	Weak transcription	Spleen	Spleen
4	chr2:54159200-54189400	Weak transcription	Aorta	Aorta
5	chr2:54159200-54189800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr2:54159400-54195800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:54161600-54189800	Weak transcription	Ovary	ovary
8	chr2:54171000-54188600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:54173400-54191400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr2:54174200-54195600	Weak transcription	Thymus	Thymus
11	chr2:54174400-54188600	Weak transcription	GM12878-XiMat	blood
12	chr2:54175200-54193000	Weak transcription	Fetal Intestine Small	intestine
13	chr2:54175200-54195400	Weak transcription	Fetal Stomach	stomach
14	chr2:54175400-54188400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr2:54175800-54189800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr2:54175800-54190000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr2:54176000-54189800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr2:54176200-54188400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr2:54176200-54188400	Weak transcription	HMEC	breast
20	chr2:54176200-54188600	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr2:54176200-54189800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr2:54176200-54189800	Weak transcription	NH-A	brain
23	chr2:54176200-54191600	Weak transcription	NHDF-Ad	bronchial
24	chr2:54176200-54192000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr2:54176200-54194200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr2:54176200-54194600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr2:54176200-54195400	Weak transcription	Fetal Intestine Large	intestine
28	chr2:54176200-54195400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr2:54176200-54196000	Weak transcription	Fetal Thymus	thymus
30	chr2:54176200-54196200	Weak transcription	Placenta	Placenta
31	chr2:54176400-54188400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr2:54176400-54189000	Weak transcription	Fetal Kidney	kidney
33	chr2:54176400-54194800	Weak transcription	NHLF	lung
34	chr2:54176400-54195000	Weak transcription	HSMM	muscle
35	chr2:54176600-54188600	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr2:54176600-54189200	Weak transcription	Adipose Nuclei	Adipose
37	chr2:54176800-54188400	Weak transcription	NHEK	skin
38	chr2:54176800-54192200	Weak transcription	Hela-S3	cervix
39	chr2:54177000-54189800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr2:54177000-54189800	Weak transcription	Dnd41	blood
41	chr2:54177000-54194800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr2:54177400-54188800	Weak transcription	Brain Hippocampus Middle	brain
43	chr2:54177400-54189600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr2:54177400-54189800	Weak transcription	Lung	lung
45	chr2:54177400-54190000	Weak transcription	Gastric	stomach
46	chr2:54177400-54191000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr2:54177400-54194400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr2:54177600-54189200	Weak transcription	HepG2	liver
49	chr2:54177800-54195400	Weak transcription	Right Ventricle	heart
50	chr2:54179400-54189800	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links