Variant report

Variant	rs544942111
Chromosome Location	chr8:61772836-61772837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv890946	chr8:61726879-61802076	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv1795586	chr8:61733174-61863906	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv429919	chr8:61771472-61979873	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61718800-61781000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:61740400-61780200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:61741800-61777600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:61741800-61780800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:61742200-61778800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:61743400-61777400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr8:61749400-61777600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr8:61750800-61776200	Strong transcription	Liver	Liver
9	chr8:61751000-61777800	Weak transcription	Aorta	Aorta
10	chr8:61751800-61780400	Strong transcription	Fetal Intestine Large	intestine
11	chr8:61752600-61780400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr8:61752800-61773800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr8:61752800-61779000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr8:61753000-61779200	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr8:61753200-61779400	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr8:61753200-61782000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:61753600-61778600	Strong transcription	Duodenum Mucosa	Duodenum
18	chr8:61759600-61776400	Strong transcription	Primary T cells from cord blood	blood
19	chr8:61760400-61780000	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr8:61760400-61780400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr8:61761000-61777800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr8:61761000-61778600	Strong transcription	Sigmoid Colon	Sigmoid Colon
23	chr8:61761000-61780600	Strong transcription	Primary B cells from peripheral blood	blood
24	chr8:61762200-61776200	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr8:61762400-61779400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr8:61764400-61780400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr8:61765000-61775800	Weak transcription	Right Atrium	heart
28	chr8:61765000-61780600	Weak transcription	Stomach Mucosa	stomach
29	chr8:61765000-61780800	Strong transcription	Primary B cells from cord blood	blood
30	chr8:61765200-61778800	Strong transcription	Fetal Lung	lung
31	chr8:61765800-61777200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr8:61766000-61775600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr8:61766200-61777600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr8:61766800-61776800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr8:61767000-61773600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr8:61767000-61777000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr8:61767000-61777400	Strong transcription	HSMM	muscle
38	chr8:61767200-61777200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr8:61768000-61774200	Strong transcription	Fetal Intestine Small	intestine
40	chr8:61768000-61778800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr8:61769400-61773400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr8:61769400-61773600	Weak transcription	Fetal Kidney	kidney
43	chr8:61769400-61776800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr8:61769600-61773400	Weak transcription	Lung	lung
45	chr8:61769600-61773400	Weak transcription	Pancreas	Pancrea
46	chr8:61769600-61773400	Weak transcription	Psoas Muscle	Psoas
47	chr8:61769600-61773600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr8:61769600-61773600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr8:61769600-61773600	Weak transcription	Esophagus	oesophagus
50	chr8:61769600-61773600	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links