Variant report

Variant	rs544944182
Chromosome Location	chr3:82857173-82857174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:82856909-82857266	MCF-7	breast:	n/a	n/a
2	POLR2A	chr3:82857016-82857297	MCF-7	breast:	n/a	n/a
3	MYC	chr3:82856974-82857207	MCF-7	breast:	n/a	n/a
4	POLR2A	chr3:82857059-82857303	HepG2	liver:	n/a	n/a
5	MYC	chr3:82857046-82857180	MCF-7	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:82857144-82857194	RPTEC	kidney:	n/a
2	chr3:82857144-82857194	AG04449	skin:	fetal
3	chr3:82857144-82857194	HAEpiC	amniotic membrane:	n/a
4	chr3:82857144-82857194	K562	blood:	n/a
5	chr3:82857144-82857194	GM19239	blood:	n/a
6	chr3:82857144-82857194	ovcar-3	ovarian:	n/a
7	chr3:82857144-82857194	HCPEpiC	choroid plexus:	n/a
8	chr3:82857144-82857194	PANC-1	pancreas:	n/a
9	chr3:82857144-82857194	PFSK-1	brain:	n/a
10	chr3:82857144-82857194	HRCEpiC	kidney:	n/a
11	chr3:82857144-82857194	HCT-116	colon:	n/a
12	chr3:82857144-82857194	NHBE	bronchial:	n/a
13	chr3:82857144-82857194	HRE	kidney:	n/a
14	chr3:82857144-82857194	MCF-7	breast:	n/a
15	chr3:82857144-82857194	H1-hESC	embryonic stem cell:	embryo
16	chr3:82857144-82857194	LNCaP	prostate:	n/a
17	chr3:82857144-82857194	HEK293	kidney:	embryo
18	chr3:82857144-82857194	Jurkat	blood:	n/a
19	chr3:82857144-82857194	MCF10A-Er-Src	breast:	n/a
20	chr3:82857144-82857194	HL-60	blood:	n/a
21	chr3:82857144-82857194	U87	brain:	n/a
22	chr3:82857144-82857194	AoSMC	blood vessel:	n/a
23	chr3:82857144-82857194	IMR90	lung:	fetal
24	chr3:82857144-82857194	HepG2	liver:	n/a
25	chr3:82857144-82857194	SKMC	muscle:	n/a
26	chr3:82857144-82857194	Caco-2	colon:	n/a
27	chr3:82857144-82857194	Hepatocyte	liver:	n/a
28	chr3:82857144-82857194	SK-N-SH	brain:	n/a
29	chr3:82857144-82857194	BJ	skin:	n/a
30	chr3:82857144-82857194	GM12892	blood:	n/a
31	chr3:82857144-82857194	A549	lung:	n/a
32	chr3:82857144-82857194	HRPEpiC	eye:	n/a
33	chr3:82857144-82857194	GM12878	blood:	n/a
34	chr3:82857144-82857194	PrEC	prostate:	n/a
35	chr3:82857144-82857194	HCF	heart:	n/a
36	chr3:82857144-82857194	AG10803	skin:	n/a
37	chr3:82857144-82857194	BE2_C	brain:	n/a
38	chr3:82857144-82857194	HPAEpiC	pulmonary alveolar:	n/a
39	chr3:82857144-82857194	AG09319	gingival:	n/a
40	chr3:82857144-82857194	ECC-1	luminal epithelium:	n/a
41	chr3:82857144-82857194	T-47D	breast:	n/a
42	chr3:82857144-82857194	NH-A	brain:	n/a
43	chr3:82857144-82857194	AG09309	skin:	n/a
44	chr3:82857144-82857194	ProgFib	skin:	n/a
45	chr3:82857144-82857194	AG04450	lung:	fetal
46	chr3:82857144-82857194	NB4	blood:	n/a
47	chr3:82857144-82857194	GM12891	blood:	n/a
48	chr3:82857144-82857194	HIPEpiC	eye:	n/a
49	chr3:82857144-82857194	HMEC	breast:	n/a
50	chr3:82857144-82857194	GM06990	blood:	n/a

No data

Variant related genes	Relation type
CYP51A1P1	TF binding region
CYP51A1P1	CpG island

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2830308	chr3:82741198-83269730	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1805592	chr3:82853590-82913445	ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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