Variant report

Variant	rs544949107
Chromosome Location	chr15:72127273-72127274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv569906	chr15:72126034-72218036	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv516871	chr15:72126034-72325595	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72114600-72190600	Weak transcription	Pancreas	Pancrea
2	chr15:72115800-72147000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr15:72116000-72140800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr15:72116000-72142000	Weak transcription	Hela-S3	cervix
5	chr15:72116400-72147000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:72117000-72142800	Weak transcription	Stomach Mucosa	stomach
7	chr15:72118800-72131400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr15:72119200-72171800	Weak transcription	Psoas Muscle	Psoas
9	chr15:72119400-72130200	Weak transcription	HUVEC	blood vessel
10	chr15:72119400-72142400	Weak transcription	Fetal Thymus	thymus
11	chr15:72119600-72139000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr15:72119800-72140800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr15:72119800-72142200	Weak transcription	Spleen	Spleen
14	chr15:72120200-72138400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:72120200-72139000	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr15:72120400-72131400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr15:72120400-72138600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr15:72120400-72142400	Weak transcription	GM12878-XiMat	blood
19	chr15:72120600-72139800	Weak transcription	HMEC	breast
20	chr15:72120600-72147400	Weak transcription	Small Intestine	intestine
21	chr15:72120800-72142200	Weak transcription	Colonic Mucosa	Colon
22	chr15:72122200-72138400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr15:72122200-72139000	Weak transcription	Fetal Brain Male	brain
24	chr15:72122200-72189400	Weak transcription	Right Ventricle	heart
25	chr15:72122400-72131000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr15:72122400-72136000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr15:72122400-72136000	Weak transcription	HSMMtube	muscle
28	chr15:72122400-72137200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr15:72122400-72137400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr15:72122400-72139200	Weak transcription	Fetal Brain Female	brain
31	chr15:72122400-72140200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr15:72122400-72141800	Weak transcription	NH-A	brain
33	chr15:72122400-72142200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr15:72122400-72195000	Weak transcription	NHEK	skin
35	chr15:72122600-72128000	Weak transcription	Colon Smooth Muscle	Colon
36	chr15:72122600-72130800	Weak transcription	Primary T cells from cord blood	blood
37	chr15:72122600-72131400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr15:72122600-72131400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr15:72122600-72131600	Weak transcription	Adipose Nuclei	Adipose
40	chr15:72122600-72131800	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr15:72122600-72132400	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr15:72122600-72132600	Weak transcription	Left Ventricle	heart
43	chr15:72122600-72133200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr15:72122600-72134800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr15:72122600-72135200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr15:72122600-72135200	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr15:72122600-72135400	Weak transcription	Fetal Intestine Small	intestine
48	chr15:72122600-72135600	Weak transcription	Brain Germinal Matrix	brain
49	chr15:72122600-72136000	Weak transcription	Liver	Liver
50	chr15:72122600-72136800	Weak transcription	Monocytes-CD14+_RO01746	blood

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