Variant report

Variant	rs544957233
Chromosome Location	chr11:45686166-45686167
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897311	chr11:45663568-45691118	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897312	chr11:45663568-45699134	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv897313	chr11:45670395-45699134	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv467870	chr11:45684557-45757401	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv554199	chr11:45684557-45757401	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
6	esv19367	chr11:45685695-45687403	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
7	esv3333567	chr11:45685776-45688474	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45680000-45688000	Enhancers	Fetal Brain Male	brain
2	chr11:45682000-45686200	Flanking Active TSS	Fetal Brain Female	brain
3	chr11:45682400-45686600	Bivalent Enhancer	Fetal Lung	lung
4	chr11:45683000-45686200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:45683400-45686200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:45684200-45686200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:45684200-45686400	Flanking Active TSS	HUVEC	blood vessel
8	chr11:45684400-45686200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:45684400-45686200	Enhancers	Placenta Amnion	Placenta Amnion
10	chr11:45684400-45686200	Bivalent Enhancer	NHLF	lung
11	chr11:45684600-45686600	Bivalent Enhancer	Fetal Thymus	thymus
12	chr11:45684800-45686600	Flanking Bivalent TSS/Enh	Dnd41	blood
13	chr11:45685200-45686200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
14	chr11:45685200-45686600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
15	chr11:45685200-45686600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
16	chr11:45685400-45686200	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:45685400-45686200	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:45685400-45686200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:45685400-45686200	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
20	chr11:45685400-45686200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:45685400-45686200	Flanking Active TSS	Ovary	ovary
22	chr11:45685400-45686200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
23	chr11:45685400-45686400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:45685400-45686400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
25	chr11:45685400-45686600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:45685400-45686600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
27	chr11:45685400-45686600	Flanking Active TSS	Gastric	stomach
28	chr11:45685400-45687000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
29	chr11:45685600-45686200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
30	chr11:45685600-45686200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:45685600-45686200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
32	chr11:45685600-45686200	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:45685600-45686200	Active TSS	Psoas Muscle	Psoas
34	chr11:45685600-45686200	Bivalent Enhancer	HMEC	breast
35	chr11:45685600-45686400	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:45685600-45686400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
37	chr11:45685600-45686400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
38	chr11:45685600-45686400	Enhancers	Esophagus	oesophagus
39	chr11:45685600-45686400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
40	chr11:45685600-45686400	Flanking Active TSS	Right Ventricle	heart
41	chr11:45685600-45686600	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
42	chr11:45685600-45687000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:45685600-45687200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:45685600-45687600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:45685600-45687800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
46	chr11:45685800-45686200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
47	chr11:45685800-45686200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:45685800-45686200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:45685800-45686200	Flanking Bivalent TSS/Enh	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr11:45685800-45686200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood

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