Variant report

Variant	rs544972728
Chromosome Location	chr5:54017844-54017845
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:54017315..54018938-chr5:54030399..54032584,2	K562	blood:
2	chr5:54017504..54021673-chr5:54022029..54028384,8	K562	blood:
3	chr5:54014127..54018411-chr5:54034085..54037239,3	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965525	chr5:54010194-54018240	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv526042	chr5:54017609-54018886	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54013200-54020800	Enhancers	Fetal Heart	heart
2	chr5:54014600-54023000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr5:54015800-54018000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:54015800-54021600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:54016000-54018000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:54016000-54021400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:54016000-54022000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr5:54016200-54018200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:54016400-54018400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:54016400-54018600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:54016400-54018600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:54016400-54021800	Weak transcription	HSMMtube	muscle
13	chr5:54016600-54018000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:54016600-54018200	Weak transcription	Osteobl	bone
15	chr5:54016600-54018600	Weak transcription	NHDF-Ad	bronchial
16	chr5:54016600-54021600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:54016800-54018200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:54016800-54018200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:54016800-54018600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:54016800-54021400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr5:54016800-54021600	Weak transcription	NH-A	brain
22	chr5:54016800-54021600	Weak transcription	NHLF	lung
23	chr5:54017000-54018600	Weak transcription	Ovary	ovary
24	chr5:54017000-54038000	Weak transcription	Aorta	Aorta
25	chr5:54017400-54018800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr5:54017600-54018000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr5:54017600-54021600	Weak transcription	Fetal Brain Male	brain

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