Variant report

Variant	rs544998573
Chromosome Location	chr5:127157490-127157491
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv4992	chr5:127151699-127196349	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv1797587	chr5:127156760-127196066	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127150000-127159400	Weak transcription	Right Atrium	heart
2	chr5:127151000-127159000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:127151000-127161200	Weak transcription	HSMM	muscle
4	chr5:127154600-127158600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:127156200-127159000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:127156600-127157800	Enhancers	Stomach Mucosa	stomach
7	chr5:127156600-127158600	Enhancers	Primary hematopoietic stem cells	blood
8	chr5:127156800-127157600	Enhancers	Colon Smooth Muscle	Colon
9	chr5:127156800-127157800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr5:127156800-127158600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr5:127156800-127159600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr5:127157000-127157600	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr5:127157000-127161000	Weak transcription	NHDF-Ad	bronchial
14	chr5:127157200-127159400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:127157200-127159400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr5:127157400-127157800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:127157400-127158000	Enhancers	A549	lung
18	chr5:127157400-127158200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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