Variant report

Variant	rs545005576
Chromosome Location	chr1:76620777-76620778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:76619799..76620863-chr1:77591812..77592540,5	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1488	chr1:76587622-76632635	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76616400-76623600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:76619800-76621000	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr1:76619800-76646400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:76620000-76620800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr1:76620000-76620800	Active TSS	Primary B cells from cord blood	blood
6	chr1:76620000-76620800	Flanking Active TSS	Primary hematopoietic stem cells	blood
7	chr1:76620000-76620800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:76620000-76620800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
9	chr1:76620000-76620800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:76620000-76620800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:76620000-76620800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:76620000-76620800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:76620000-76620800	Flanking Active TSS	Adipose Nuclei	Adipose
14	chr1:76620000-76620800	Flanking Active TSS	Brain Hippocampus Middle	brain
15	chr1:76620000-76620800	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr1:76620000-76620800	Active TSS	Colonic Mucosa	Colon
17	chr1:76620000-76620800	Active TSS	Duodenum Smooth Muscle	Duodenum
18	chr1:76620000-76620800	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr1:76620000-76620800	Active TSS	Rectal Smooth Muscle	rectum
20	chr1:76620000-76620800	Flanking Active TSS	HUVEC	blood vessel
21	chr1:76620000-76620800	Active TSS	NHLF	lung
22	chr1:76620200-76620800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr1:76620200-76620800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr1:76620200-76620800	Flanking Active TSS	Brain Anterior Caudate	brain
25	chr1:76620200-76621000	Enhancers	Esophagus	oesophagus
26	chr1:76620400-76620800	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr1:76620400-76620800	Active TSS	Brain Angular Gyrus	brain
28	chr1:76620400-76620800	Enhancers	Fetal Brain Male	brain
29	chr1:76620400-76621000	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr1:76620400-76621000	Active TSS	Brain Substantia Nigra	brain
31	chr1:76620400-76621000	Enhancers	Fetal Lung	lung
32	chr1:76620400-76621000	Enhancers	Placenta	Placenta
33	chr1:76620400-76621000	Enhancers	Psoas Muscle	Psoas
34	chr1:76620400-76621000	Enhancers	Stomach Mucosa	stomach
35	chr1:76620400-76621000	Enhancers	Spleen	Spleen
36	chr1:76620400-76623800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr1:76620400-76624000	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr1:76620600-76620800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr1:76620600-76620800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr1:76620600-76620800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
41	chr1:76620600-76620800	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr1:76620600-76620800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr1:76620600-76620800	Enhancers	Primary T killer memory cells from peripheral blood	blood
44	chr1:76620600-76620800	Enhancers	Brain Germinal Matrix	brain
45	chr1:76620600-76620800	Active TSS	Fetal Kidney	kidney
46	chr1:76620600-76620800	Enhancers	Fetal Stomach	stomach
47	chr1:76620600-76620800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
48	chr1:76620600-76620800	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr1:76620600-76620800	Enhancers	Stomach Smooth Muscle	stomach
50	chr1:76620600-76620800	Active TSS	K562	blood

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