Variant report

Variant	rs545026528
Chromosome Location	chr21:18374467-18374468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064857	chr21:17628760-18533131	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
2	nsv544382	chr21:17628760-18533131	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
3	esv2751924	chr21:18169497-18541529	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv834053	chr21:18369514-18500929	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv587081	chr21:18370713-18402124	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv913428	chr21:18373340-18425733	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:18370200-18375600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr21:18371400-18375400	Weak transcription	Ovary	ovary
3	chr21:18372400-18375200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr21:18372600-18374600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr21:18373000-18377000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr21:18373200-18376600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr21:18374000-18375000	Enhancers	Dnd41	blood
8	chr21:18374000-18376600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr21:18374000-18376800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr21:18374200-18374800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr21:18374200-18376000	Enhancers	HSMMtube	muscle
12	chr21:18374200-18376200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr21:18374200-18376200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr21:18374200-18376200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr21:18374200-18376400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr21:18374400-18374800	Active TSS	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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