Variant report

Variant	rs545132235
Chromosome Location	chr3:154798058-154798059
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:154797513-154798272	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr3:154797426-154798307	H1-hESC	embryonic stem cell:	n/a	n/a
3	CCNT2	chr3:154797526-154798068	K562	blood:	n/a	n/a
4	TBP	chr3:154797622-154798260	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr3:154797505-154798984	MCF10A-Er-Src	breast:	n/a	n/a
6	POLR2A	chr3:154797879-154798282	H1-hESC	embryonic stem cell:	n/a	n/a
7	YY1	chr3:154797741-154798230	H1-hESC	embryonic stem cell:	n/a	chr3:154797900-154797911
8	POLR2A	chr3:154797740-154798199	H1-hESC	embryonic stem cell:	n/a	n/a
9	POLR2A	chr3:154797463-154798344	MCF10A-Er-Src	breast:	n/a	n/a
10	PBX3	chr3:154796810-154798333	SK-N-SH	brain:	n/a	chr3:154797735-154797744
11	GTF2F1	chr3:154797867-154798176	H1-hESC	embryonic stem cell:	n/a	n/a
12	CTCF	chr3:154797980-154798130	HBMEC	blood vessel:	n/a	n/a
13	BACH1	chr3:154797474-154798778	H1-hESC	embryonic stem cell:	n/a	n/a
14	REST	chr3:154797941-154798287	SK-N-SH	brain:	n/a	n/a
15	MAX	chr3:154797555-154798193	H1-hESC	embryonic stem cell:	n/a	chr3:154798073-154798081
16	MYC	chr3:154797716-154798093	H1-hESC	embryonic stem cell:	n/a	chr3:154798073-154798081
17	TAF1	chr3:154797595-154798499	SK-N-SH	brain:	n/a	n/a
18	SIN3AK20	chr3:154797476-154798283	SK-N-SH	brain:	n/a	n/a
19	MAFK	chr3:154798010-154798784	H1-hESC	embryonic stem cell:	n/a	chr3:154798616-154798627 chr3:154798607-154798627 chr3:154798610-154798624 chr3:154798616-154798627 chr3:154798612-154798627 chr3:154798609-154798625
20	MAX	chr3:154797352-154798231	SK-N-SH	brain:	n/a	chr3:154798073-154798081
21	POLR2A	chr3:154797287-154798230	ProgFib	skin:	n/a	n/a
22	TAF1	chr3:154797762-154798230	H1-hESC	embryonic stem cell:	n/a	n/a
23	TEAD4	chr3:154796984-154798252	SK-N-SH	brain:	n/a	n/a
24	REST	chr3:154797784-154798293	SK-N-SH	brain:	n/a	chr3:154797843-154797853 chr3:154797923-154797936
25	TEAD4	chr3:154797905-154798188	H1-hESC	embryonic stem cell:	n/a	n/a
26	POLR2A	chr3:154796309-154799404	SK-N-SH	brain:	n/a	n/a
27	SIN3A	chr3:154797495-154798311	H1-hESC	embryonic stem cell:	n/a	chr3:154797754-154797765
28	MAX	chr3:154797402-154798219	H1-hESC	embryonic stem cell:	n/a	chr3:154798073-154798081
29	MXI1	chr3:154797674-154798111	H1-hESC	embryonic stem cell:	n/a	n/a
30	JUND	chr3:154797967-154798575	K562	blood:	n/a	n/a
31	POLR2A	chr3:154797863-154798110	K562	blood:	n/a	n/a
32	CTBP2	chr3:154797512-154798221	H1-hESC	embryonic stem cell:	n/a	n/a
33	KAP1	chr3:154797600-154798204	HEK293	kidney:	n/a	n/a
34	POLR2A	chr3:154796370-154798315	Raji	blood:	n/a	n/a
35	SP4	chr3:154797802-154798151	H1-hESC	embryonic stem cell:	n/a	n/a
36	EP300	chr3:154797065-154798444	SK-N-SH	brain:	n/a	chr3:154798003-154798019 chr3:154798232-154798246 chr3:154798229-154798243 chr3:154797392-154797408 chr3:154797900-154797916
37	POLR2A	chr3:154797364-154798145	U87	brain:	n/a	n/a
38	POLR2A	chr3:154797802-154798187	H1-hESC	embryonic stem cell:	n/a	n/a
39	UBTF	chr3:154797478-154798269	K562	blood:	n/a	n/a
40	CHD1	chr3:154797947-154798281	H1-hESC	embryonic stem cell:	n/a	n/a
41	KAP1	chr3:154797731-154798240	U2OS	brain:	n/a	n/a
42	ZNF143	chr3:154797687-154798277	H1-hESC	embryonic stem cell:	n/a	chr3:154797902-154797920 chr3:154798100-154798119
43	MAZ	chr3:154797333-154798189	K562	blood:	n/a	chr3:154798073-154798081
44	TAF1	chr3:154797426-154798275	H1-hESC	embryonic stem cell:	n/a	n/a
45	JUND	chr3:154797908-154798491	H1-hESC	embryonic stem cell:	n/a	n/a
46	BHLHE40	chr3:154797570-154798230	K562	blood:	n/a	n/a
47	RCOR1	chr3:154798054-154798223	K562	blood:	n/a	n/a
48	RAD21	chr3:154796901-154798184	H1-hESC	embryonic stem cell:	n/a	chr3:154797713-154797725 chr3:154797640-154797654
49	MAX	chr3:154796686-154798269	SK-N-SH	brain:	n/a	chr3:154798073-154798081
50	TAF1	chr3:154796825-154798316	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
MME	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868930	chr3:154076125-154820242	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1000140	chr3:154336261-154905740	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534289	chr3:154535584-154987166	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv532663	chr3:154561578-154960353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv963491	chr3:154795648-154803797	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3325286	chr3:154796483-154799031	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:154796000-154802200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:154796200-154799600	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr3:154796200-154799600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:154796400-154799000	Active TSS	Placenta Amnion	Placenta Amnion
5	chr3:154796400-154799200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr3:154796400-154800000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:154796400-154800000	Active TSS	NHLF	lung
8	chr3:154796600-154798200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:154796600-154798400	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr3:154796600-154798400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:154796600-154798400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
12	chr3:154796600-154798600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
13	chr3:154796600-154798600	Active TSS	Thymus	Thymus
14	chr3:154796600-154798600	Active TSS	HSMM	muscle
15	chr3:154796600-154798800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr3:154796600-154798800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:154796600-154798800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr3:154796600-154798800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr3:154796600-154798800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:154796600-154799000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr3:154796600-154799000	Active TSS	H9 Cell Line	embryonic stem cell
22	chr3:154796600-154799000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:154796600-154799000	Active TSS	Placenta	Placenta
24	chr3:154796600-154799200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr3:154796600-154800000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:154796600-154800200	Active TSS	Psoas Muscle	Psoas
27	chr3:154796600-154800600	Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr3:154796600-154802000	Active TSS	Duodenum Mucosa	Duodenum
29	chr3:154796800-154798400	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
30	chr3:154796800-154798600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:154796800-154798600	Bivalent/Poised TSS	Fetal Brain Female	brain
32	chr3:154796800-154798600	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
33	chr3:154796800-154798800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
34	chr3:154796800-154798800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
35	chr3:154796800-154798800	Bivalent/Poised TSS	NH-A	brain
36	chr3:154796800-154799400	Active TSS	NHDF-Ad	bronchial
37	chr3:154796800-154799600	Active TSS	Muscle Satellite Cultured Cells	--
38	chr3:154796800-154801200	Active TSS	Fetal Kidney	kidney
39	chr3:154797000-154798200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
40	chr3:154797000-154798200	Active TSS	Ovary	ovary
41	chr3:154797000-154798200	Bivalent Enhancer	Stomach Mucosa	stomach
42	chr3:154797000-154798400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr3:154797000-154798400	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
44	chr3:154797000-154798800	Active TSS	H1 Cell Line	embryonic stem cell
45	chr3:154797000-154798800	Active TSS	HUES48 Cell Line	embryonic stem cell
46	chr3:154797000-154798800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
47	chr3:154797000-154799000	Active TSS	HSMMtube	muscle
48	chr3:154797000-154799600	Active TSS	Skeletal Muscle Female	skeletal muscle
49	chr3:154797200-154798200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr3:154797200-154798200	Bivalent/Poised TSS	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links