Variant report

Variant	rs545150320
Chromosome Location	chr1:57320116-57320117
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr1:57320038-57320820	HepG2	liver:	n/a	n/a
2	HNF4G	chr1:57319994-57320583	HepG2	liver:	n/a	chr1:57320323-57320337 chr1:57320321-57320336 chr1:57319996-57320011 chr1:57319996-57320011 chr1:57320321-57320339 chr1:57320337-57320352 chr1:57320322-57320337 chr1:57319996-57320011
3	MYBL2	chr1:57319940-57320921	HepG2	liver:	n/a	n/a
4	MBD4	chr1:57320068-57320946	HepG2	liver:	n/a	n/a
5	NR2F2	chr1:57319989-57320792	HepG2	liver:	n/a	n/a
6	HNF4A	chr1:57320081-57320459	HepG2	liver:	n/a	chr1:57320323-57320337 chr1:57320321-57320339 chr1:57320322-57320337 chr1:57320322-57320337
7	EP300	chr1:57319998-57320908	HepG2	liver:	n/a	n/a
8	TEAD4	chr1:57319834-57320664	HepG2	liver:	n/a	n/a
9	POLR2A	chr1:57320036-57321296	HepG2	liver:	n/a	n/a
10	ARID3A	chr1:57319785-57320899	HepG2	liver:	n/a	n/a
11	FOXA1	chr1:57320014-57320882	HepG2	liver:	n/a	n/a
12	FOXA2	chr1:57319896-57320908	HepG2	liver:	n/a	n/a
13	CEBPB	chr1:57319925-57320524	HepG2	liver:	n/a	chr1:57320038-57320055 chr1:57320039-57320050
14	POLR2A	chr1:57320086-57320121	HepG2	liver:	n/a	n/a
15	RAD21	chr1:57320065-57320844	HepG2	liver:	n/a	n/a
16	HEY1	chr1:57320092-57321245	HepG2	liver:	n/a	n/a
17	EP300	chr1:57320116-57320737	HepG2	liver:	n/a	n/a
18	MYBL2	chr1:57319821-57321018	HepG2	liver:	n/a	n/a
19	FOXA1	chr1:57320058-57320761	HepG2	liver:	n/a	n/a
20	HNF4G	chr1:57320062-57320565	HepG2	liver:	n/a	chr1:57320323-57320337 chr1:57320321-57320336 chr1:57320321-57320339 chr1:57320337-57320352 chr1:57320322-57320337
21	RXRA	chr1:57320100-57320751	HepG2	liver:	n/a	n/a
22	TCF7L2	chr1:57319795-57320762	HepG2	liver:	n/a	n/a
23	NR2F2	chr1:57319867-57321052	HepG2	liver:	n/a	n/a
24	FOXA1	chr1:57320007-57320885	HepG2	liver:	n/a	n/a
25	FOXA1	chr1:57319970-57320945	HepG2	liver:	n/a	n/a
26	HDAC2	chr1:57320023-57320840	HepG2	liver:	n/a	chr1:57320283-57320297
27	SMC3	chr1:57319938-57320762	HepG2	liver:	n/a	n/a
28	NFIC	chr1:57319934-57321019	HepG2	liver:	n/a	n/a
29	SP1	chr1:57319918-57320910	HepG2	liver:	n/a	n/a
30	NFIC	chr1:57320063-57320971	HepG2	liver:	n/a	n/a
31	FOXA2	chr1:57319818-57320818	HepG2	liver:	n/a	n/a
32	EP300	chr1:57319821-57320891	HepG2	liver:	n/a	n/a
33	MBD4	chr1:57320094-57320913	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
C8A	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv508215	chr1:57319460-57351150	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57316600-57323200	Enhancers	Fetal Intestine Small	intestine
2	chr1:57319000-57320400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr1:57319200-57320200	Weak transcription	Fetal Intestine Large	intestine
4	chr1:57320000-57320200	Flanking Active TSS	Liver	Liver
5	chr1:57320000-57320400	Flanking Active TSS	HepG2	liver

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