Variant report

Variant	rs545155959
Chromosome Location	chr11:119611897-119611898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:119611511..119614247-chr11:119631604..119633429,2	MCF-7	breast:
2	chr11:119591659..119592433-chr11:119611738..119612581,2	MCF-7	breast:
3	chr11:119610610..119612359-chr11:119615622..119618521,2	K562	blood:
4	chr11:119536864..119537801-chr11:119611746..119612718,4	MCF-7	breast:
5	chr11:119537219..119537738-chr11:119611684..119612227,2	K562	blood:
6	chr11:119610859..119613381-chr11:119617021..119619803,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1051769	chr11:119572865-119630769	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1037739	chr11:119592989-119630641	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3357144	chr11:119610642-119614840	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119601200-119612000	Weak transcription	Esophagus	oesophagus
2	chr11:119601200-119612200	Weak transcription	Right Atrium	heart
3	chr11:119601400-119612200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:119601400-119612200	Weak transcription	HMEC	breast
5	chr11:119601600-119612000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:119601600-119612000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:119601600-119612200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:119601800-119612000	Weak transcription	Spleen	Spleen
9	chr11:119601800-119612200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:119601800-119612200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:119605400-119612200	Enhancers	Fetal Intestine Small	intestine
12	chr11:119609000-119612000	Weak transcription	Fetal Brain Female	brain
13	chr11:119609200-119612600	Enhancers	Duodenum Mucosa	Duodenum
14	chr11:119609800-119613600	Enhancers	Pancreas	Pancrea
15	chr11:119610000-119612000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr11:119610400-119614400	Enhancers	Gastric	stomach
17	chr11:119610600-119612400	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr11:119611200-119612000	Weak transcription	Brain Germinal Matrix	brain
19	chr11:119611200-119612600	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr11:119611200-119614400	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr11:119611400-119612200	Bivalent Enhancer	Fetal Intestine Large	intestine
22	chr11:119611600-119612000	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
23	chr11:119611600-119612200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
24	chr11:119611600-119612600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:119611600-119612800	Bivalent Enhancer	Brain Substantia Nigra	brain
26	chr11:119611600-119614400	Bivalent Enhancer	Stomach Mucosa	stomach
27	chr11:119611800-119612000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:119611800-119612000	Bivalent Enhancer	Brain Angular Gyrus	brain
29	chr11:119611800-119612000	Enhancers	Brain Hippocampus Middle	brain
30	chr11:119611800-119612000	Bivalent Enhancer	Colonic Mucosa	Colon
31	chr11:119611800-119612000	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
32	chr11:119611800-119612000	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
33	chr11:119611800-119612200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr11:119611800-119612200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:119611800-119612200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:119611800-119612200	Bivalent Enhancer	Brain Cingulate Gyrus	brain
37	chr11:119611800-119612200	Bivalent Enhancer	Stomach Smooth Muscle	stomach
38	chr11:119611800-119613200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
39	chr11:119611800-119613200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain

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