Variant report

Variant	rs545163029
Chromosome Location	chr7:138349879-138349880
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr7:138349769-138352437	SK-N-SH	brain:	n/a	chr7:138350358-138350365

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:138144628..138146925-chr7:138348716..138351288,3	MCF-7	breast:

Variant related genes	Relation type
SVOPL	TF binding region
ENSG00000122779	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv3325609	chr7:138348437-138351285	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3426851	chr7:138348612-138351035	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138348400-138350000	Active TSS	H1 Cell Line	embryonic stem cell
2	chr7:138348400-138350000	Active TSS	Brain Anterior Caudate	brain
3	chr7:138348400-138350000	Active TSS	Brain Hippocampus Middle	brain
4	chr7:138348400-138350000	Active TSS	Brain Substantia Nigra	brain
5	chr7:138348400-138350200	Active TSS	H9 Cell Line	embryonic stem cell
6	chr7:138348600-138350000	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr7:138348600-138350200	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr7:138348800-138350000	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr7:138348800-138350000	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr7:138348800-138350000	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr7:138348800-138350000	Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr7:138348800-138350000	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr7:138349200-138350000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:138349400-138350000	Weak transcription	Brain Angular Gyrus	brain
15	chr7:138349400-138350000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr7:138349400-138350000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr7:138349400-138350000	Weak transcription	Fetal Kidney	kidney
18	chr7:138349400-138350000	Weak transcription	Spleen	Spleen
19	chr7:138349400-138350200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:138349400-138350200	Enhancers	Placenta Amnion	Placenta Amnion
21	chr7:138349400-138351200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:138349400-138351600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:138349600-138350000	Weak transcription	Fetal Intestine Large	intestine
24	chr7:138349600-138350000	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr7:138349600-138350200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr7:138349600-138350200	Enhancers	Colonic Mucosa	Colon
27	chr7:138349600-138350200	Enhancers	Fetal Thymus	thymus
28	chr7:138349600-138350400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr7:138349600-138350400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr7:138349600-138351200	Weak transcription	Right Atrium	heart
31	chr7:138349600-138351400	Enhancers	Placenta	Placenta
32	chr7:138349600-138351800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr7:138349600-138352800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr7:138349600-138353000	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr7:138349600-138353000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr7:138349800-138350000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr7:138349800-138350600	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr7:138349800-138350600	Enhancers	HepG2	liver
39	chr7:138349800-138351200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr7:138349800-138351200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr7:138349800-138351400	Enhancers	Duodenum Mucosa	Duodenum
42	chr7:138349800-138351800	Enhancers	Ovary	ovary
43	chr7:138349800-138352000	Enhancers	Fetal Intestine Small	intestine
44	chr7:138349800-138352600	Enhancers	Fetal Heart	heart
45	chr7:138349800-138355000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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