Variant report

Variant	rs545199052
Chromosome Location	chr19:42250336-42250337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
CEACAM6	TF binding region
ENSG00000007306	Chromatin interaction
ENSG00000267881	Chromatin interaction
ENSG00000105388	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522854	chr19:42120283-42931004	Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	esv3425986	chr19:42212540-42259719	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv579615	chr19:42221434-42310388	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv3430577	chr19:42247653-42285973	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv911774	chr19:42250325-42288821	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42246600-42250600	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr19:42246600-42250800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr19:42246600-42251000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr19:42247000-42251000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr19:42248000-42250600	Enhancers	Fetal Intestine Large	intestine
6	chr19:42248200-42251000	Enhancers	Fetal Intestine Small	intestine
7	chr19:42248400-42250800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr19:42248400-42250800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr19:42249000-42250600	Enhancers	Colonic Mucosa	Colon
10	chr19:42249000-42251200	Enhancers	Stomach Mucosa	stomach
11	chr19:42249400-42251000	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr19:42249600-42250400	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr19:42250200-42250400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr19:42250200-42250400	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
15	chr19:42250200-42250400	Enhancers	Small Intestine	intestine
16	chr19:42250200-42250600	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
17	chr19:42250200-42250800	Enhancers	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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