Variant report

Variant	rs545239233
Chromosome Location	chr11:58336829-58336830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58334595..58336830-chr11:58344881..58347301,2	MCF-7	breast:
2	chr11:58334129..58337233-chr11:58345487..58348249,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110031	Chromatin interaction
ENSG00000186660	Chromatin interaction
ENSG00000255073	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv528190	chr11:58336620-58347765	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58300000-58340600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:58300600-58338600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:58309600-58338800	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr11:58315600-58340400	Weak transcription	Stomach Mucosa	stomach
5	chr11:58318400-58341000	Weak transcription	Right Ventricle	heart
6	chr11:58318400-58344800	Weak transcription	Fetal Brain Male	brain
7	chr11:58318600-58344400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:58318800-58340600	Weak transcription	NHLF	lung
9	chr11:58318800-58341400	Weak transcription	Psoas Muscle	Psoas
10	chr11:58319200-58343000	Weak transcription	Fetal Brain Female	brain
11	chr11:58320000-58341000	Weak transcription	HSMMtube	muscle
12	chr11:58320200-58340800	Weak transcription	Colon Smooth Muscle	Colon
13	chr11:58320600-58338200	Weak transcription	HMEC	breast
14	chr11:58321600-58337200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:58321600-58340400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:58321800-58340400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:58321800-58341200	Weak transcription	Colonic Mucosa	Colon
18	chr11:58321800-58345000	Weak transcription	Ovary	ovary
19	chr11:58322200-58337000	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr11:58322400-58344200	Weak transcription	Fetal Lung	lung
21	chr11:58329400-58341000	Weak transcription	Brain Angular Gyrus	brain
22	chr11:58329400-58342600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:58329400-58344400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:58330200-58343000	Weak transcription	Fetal Kidney	kidney
25	chr11:58330400-58338800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
26	chr11:58330600-58345000	Weak transcription	Gastric	stomach
27	chr11:58331000-58338000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:58331400-58341000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr11:58332800-58340200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr11:58334200-58337000	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr11:58334200-58337000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr11:58334400-58338200	Strong transcription	HSMM	muscle
33	chr11:58334600-58338400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr11:58334800-58339600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
35	chr11:58335000-58337400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr11:58335000-58338600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr11:58335400-58338800	Genic enhancers	Primary T cells fromperipheralblood	blood
38	chr11:58335600-58340400	Weak transcription	Brain Hippocampus Middle	brain
39	chr11:58335800-58339800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr11:58335800-58340400	Weak transcription	Hela-S3	cervix
41	chr11:58336000-58337200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr11:58336000-58337400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:58336000-58337600	Strong transcription	Adipose Nuclei	Adipose
44	chr11:58336000-58338200	Strong transcription	Brain Cingulate Gyrus	brain
45	chr11:58336000-58338400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr11:58336000-58338600	Strong transcription	Primary B cells from peripheral blood	blood
47	chr11:58336200-58337400	Strong transcription	Placenta	Placenta
48	chr11:58336200-58337600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr11:58336200-58337600	Strong transcription	Left Ventricle	heart
50	chr11:58336200-58337600	Enhancers	NHEK	skin

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