Variant report

Variant	rs545262816
Chromosome Location	chr8:52873217-52873218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:52870845..52873668-chr8:52875256..52877463,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1031672	chr8:52872448-52917469	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52867000-52873800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:52868200-52873600	Weak transcription	Primary B cells from cord blood	blood
3	chr8:52870200-52874200	Weak transcription	Fetal Brain Male	brain
4	chr8:52870800-52873800	Weak transcription	Fetal Muscle Leg	muscle
5	chr8:52871000-52873600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr8:52871000-52874400	Weak transcription	HMEC	breast
7	chr8:52871200-52875000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:52871400-52873800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:52871400-52873800	Weak transcription	Pancreas	Pancrea
10	chr8:52871400-52874200	Weak transcription	Placenta	Placenta
11	chr8:52871400-52874400	Weak transcription	Fetal Intestine Small	intestine
12	chr8:52872200-52873600	Weak transcription	Primary T cells from cord blood	blood
13	chr8:52872400-52873400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr8:52872400-52873600	Enhancers	GM12878-XiMat	blood
15	chr8:52872600-52874200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr8:52872600-52874200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr8:52872800-52873800	Weak transcription	Psoas Muscle	Psoas
18	chr8:52872800-52874200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr8:52873000-52874600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr8:52873200-52873800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr8:52873200-52875600	Flanking Active TSS	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links