Variant report

Variant	rs545279884
Chromosome Location	chr11:77584231-77584232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77581791..77584975-chr11:77585313..77588016,3	K562	blood:

Variant related genes	Relation type
ENSG00000087884	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv520740	chr11:77553638-77997936	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv1035753	chr11:77577384-77866386	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv541093	chr11:77577384-77866386	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv555453	chr11:77577494-77618441	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv524537	chr11:77583266-77593221	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77566000-77592600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr11:77566200-77589000	Weak transcription	NHLF	lung
3	chr11:77566200-77589600	Weak transcription	Esophagus	oesophagus
4	chr11:77566200-77594600	Weak transcription	Colon Smooth Muscle	Colon
5	chr11:77566800-77587800	Weak transcription	A549	lung
6	chr11:77567000-77586600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:77567600-77589600	Weak transcription	HepG2	liver
8	chr11:77567800-77589400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:77567800-77594800	Weak transcription	Brain Angular Gyrus	brain
10	chr11:77568000-77586800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr11:77568000-77587000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:77568200-77589400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:77568200-77590400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:77568200-77594600	Weak transcription	Fetal Kidney	kidney
15	chr11:77569000-77597600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:77574600-77593200	Weak transcription	Gastric	stomach
17	chr11:77576200-77586800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:77577400-77588800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:77577400-77589400	Strong transcription	Fetal Muscle Leg	muscle
20	chr11:77577400-77630800	Weak transcription	Fetal Heart	heart
21	chr11:77578000-77585800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:77578200-77589600	Strong transcription	Adipose Nuclei	Adipose
23	chr11:77578400-77586600	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr11:77578400-77589400	Weak transcription	NHDF-Ad	bronchial
25	chr11:77578600-77591400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr11:77578600-77597400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:77578800-77590600	Weak transcription	Hela-S3	cervix
28	chr11:77578800-77601400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr11:77579000-77593200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr11:77579200-77625000	Weak transcription	HMEC	breast
31	chr11:77579400-77589400	Weak transcription	NHEK	skin
32	chr11:77579600-77589800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr11:77579800-77584400	Strong transcription	Fetal Intestine Large	intestine
34	chr11:77579800-77585200	Strong transcription	Fetal Lung	lung
35	chr11:77579800-77589000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:77579800-77589000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:77579800-77597800	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr11:77580000-77597800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr11:77580200-77597400	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr11:77580400-77588400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr11:77580600-77596000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:77580800-77589600	Weak transcription	K562	blood
43	chr11:77580800-77597800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:77581000-77586200	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr11:77581000-77587000	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr11:77581000-77587000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr11:77581000-77589400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:77581000-77589400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:77581000-77589400	Weak transcription	NH-A	brain
50	chr11:77581000-77589600	Weak transcription	Rectal Smooth Muscle	rectum

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