The 2.0 version of rSNPBase

Variant report

Variant rs545346002
Chromosome Location chr1:63275578-63275579
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:63250800-63319000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr1:63251000-63296000 Weak transcription Fetal Thymus thymus
3 chr1:63251000-63317800 Weak transcription Fetal Adrenal Gland Adrenal Gland
4 chr1:63251000-63327400 Weak transcription Fetal Stomach stomach
5 chr1:63251200-63327400 Weak transcription Rectal Mucosa Donor 29 rectum
6 chr1:63251400-63275600 Weak transcription Primary T helper cells PMA-I stimulated --
7 chr1:63252000-63284400 Weak transcription Primary T helper cells fromperipheralblood blood
8 chr1:63257400-63293400 Weak transcription Brain Anterior Caudate brain
9 chr1:63261600-63326400 Weak transcription Placenta Placenta
10 chr1:63262800-63276000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
11 chr1:63262800-63293000 Weak transcription Brain Substantia Nigra brain
12 chr1:63264800-63282800 Weak transcription Left Ventricle heart
13 chr1:63266200-63276200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr1:63266800-63284600 Weak transcription Fetal Kidney kidney
15 chr1:63267000-63276000 Weak transcription Fetal Lung lung
16 chr1:63267000-63279800 Weak transcription Rectal Smooth Muscle rectum
17 chr1:63267200-63275800 Weak transcription Duodenum Smooth Muscle Duodenum
18 chr1:63267200-63327000 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr1:63267200-63327400 Weak transcription Colon Smooth Muscle Colon
20 chr1:63267400-63276000 Weak transcription HUES6 Cell Line embryonic stem cell
21 chr1:63267400-63283400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:63267600-63287200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
23 chr1:63268000-63278800 Weak transcription Primary T killer naive cells fromperipheralblood blood
24 chr1:63268400-63297000 Weak transcription Brain Hippocampus Middle brain
25 chr1:63268600-63276600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
26 chr1:63268600-63319600 Weak transcription Liver Liver
27 chr1:63268800-63276000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
28 chr1:63268800-63276000 Weak transcription Adipose Nuclei Adipose
29 chr1:63268800-63317600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr1:63269200-63317400 Weak transcription Dnd41 blood
31 chr1:63269600-63309600 Weak transcription Brain Angular Gyrus brain
32 chr1:63270000-63286000 Weak transcription Fetal Intestine Large intestine
33 chr1:63270200-63287400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr1:63270400-63277200 Weak transcription Breast Myoepithelial Primary Cells Breast
35 chr1:63270400-63331400 Weak transcription Primary T regulatory cells fromperipheralblood blood
36 chr1:63270800-63275600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
37 chr1:63271400-63276000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr1:63271400-63324400 Weak transcription Pancreas Pancrea
39 chr1:63271600-63326800 Weak transcription Aorta Aorta
40 chr1:63271600-63327400 Weak transcription Thymus Thymus
41 chr1:63271800-63324000 Weak transcription Primary T helper naive cells fromperipheralblood blood
42 chr1:63272400-63282200 Weak transcription Fetal Heart heart
43 chr1:63272400-63282600 Weak transcription Stomach Smooth Muscle stomach
44 chr1:63272800-63278600 Strong transcription Primary hematopoietic stem cells short term culture blood
45 chr1:63273000-63275600 Weak transcription iPS-20b Cell Line embryonic stem cell
46 chr1:63273000-63311600 Weak transcription Skeletal Muscle Female skeletal muscle
47 chr1:63273200-63276000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
48 chr1:63273200-63291000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
49 chr1:63273200-63299000 Weak transcription HUES48 Cell Line embryonic stem cell
50 chr1:63273200-63306400 Weak transcription iPS-18 Cell Line embryonic stem cell

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Last update: Aug 31, 2015