Variant report

Variant	rs545380900
Chromosome Location	chr19:40781808-40781809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:40781762-40793937	PANC-1	pancreas:	n/a	n/a
2	ZNF384	chr19:40781799-40782417	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:56708147..56710537-chr19:40780894..40783062,2	MCF-7	breast:
2	chr19:40780031..40782205-chr19:40949064..40951116,2	K562	blood:
3	chr19:40774152..40777118-chr19:40779107..40782198,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205041	TF binding region
ENSG00000167565	Chromatin interaction
ENSG00000268366	Chromatin interaction
ENSG00000105221	Chromatin interaction
ENSG00000212195	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826663	chr19:40529943-41023601	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	esv2758499	chr19:40612420-40839520	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv2758761	chr19:40612420-40839520	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv911699	chr19:40691632-40816530	Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	esv1833489	chr19:40722123-40923908	Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv1057052	chr19:40776128-40789766	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
7	esv1797453	chr19:40780963-40786797	Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40766200-40788600	Weak transcription	HSMMtube	muscle
2	chr19:40769600-40783600	Weak transcription	Fetal Kidney	kidney
3	chr19:40770000-40789600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:40770000-40789600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr19:40770200-40789600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr19:40770200-40790200	Weak transcription	Aorta	Aorta
7	chr19:40770400-40784000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr19:40771000-40783600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr19:40771400-40789400	Weak transcription	HUVEC	blood vessel
10	chr19:40771600-40786000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr19:40776000-40787400	Weak transcription	A549	lung
12	chr19:40776400-40785000	Weak transcription	NHLF	lung
13	chr19:40776600-40783200	Weak transcription	Fetal Intestine Large	intestine
14	chr19:40776600-40783800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr19:40776600-40785800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr19:40778000-40786400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr19:40778400-40783600	Weak transcription	NHEK	skin
18	chr19:40778600-40784000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr19:40778600-40784400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr19:40778800-40784200	Weak transcription	HSMM	muscle
21	chr19:40778800-40784200	Weak transcription	Osteobl	bone
22	chr19:40778800-40785200	Weak transcription	HMEC	breast
23	chr19:40778800-40786200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr19:40778800-40787600	Weak transcription	Hela-S3	cervix
25	chr19:40779000-40786800	Weak transcription	Dnd41	blood
26	chr19:40779200-40782200	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr19:40779400-40782600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr19:40779400-40789600	Enhancers	Left Ventricle	heart
29	chr19:40779600-40782200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr19:40779600-40782200	Enhancers	Liver	Liver
31	chr19:40779600-40782200	Genic enhancers	Fetal Stomach	stomach
32	chr19:40779600-40782200	Enhancers	Ovary	ovary
33	chr19:40779600-40782200	Enhancers	Spleen	Spleen
34	chr19:40779800-40789800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr19:40780000-40782200	Enhancers	Primary B cells from cord blood	blood
36	chr19:40780000-40782200	Enhancers	Primary B cells from peripheral blood	blood
37	chr19:40780000-40782200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr19:40780000-40783800	Weak transcription	HepG2	liver
39	chr19:40780200-40783400	Weak transcription	Stomach Mucosa	stomach
40	chr19:40780400-40782200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr19:40780400-40783600	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr19:40780600-40782200	Enhancers	Adipose Nuclei	Adipose
43	chr19:40780600-40782400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
44	chr19:40780600-40783000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr19:40780600-40783600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr19:40780600-40784800	Weak transcription	Fetal Brain Female	brain
47	chr19:40780600-40786200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr19:40780800-40783000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr19:40780800-40783800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr19:40781000-40782000	Enhancers	Primary T helper cells PMA-I stimulated	--

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