Variant report

Variant	rs545456741
Chromosome Location	chr1:93794582-93794583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr1:93794215-93794896	SK-N-SH	brain:	n/a	chr1:93794697-93794704
2	TCF3	chr1:93794378-93794743	GM12878	blood:	n/a	n/a
3	SPI1	chr1:93794406-93794799	GM12891	blood:	n/a	n/a
4	POLR2A	chr1:93794025-93795046	K562	blood:	n/a	n/a
5	TCF12	chr1:93794545-93794746	GM12878	blood:	n/a	chr1:93794697-93794704
6	SPI1	chr1:93794517-93794709	GM12878	blood:	n/a	n/a
7	TCF3	chr1:93794316-93794859	GM12878	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:93794370..93796630-chr1:93807088..93808805,2	K562	blood:
2	chr1:93792575..93795047-chr1:93809728..93812578,2	K562	blood:
3	chr1:93793661..93797290-chr1:93805926..93809295,5	MCF-7	breast:
4	chr1:93779027..93781639-chr1:93793756..93796548,2	K562	blood:
5	chr1:93793462..93796127-chr1:93796578..93799399,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMED5-1	chr1:93792580-93803825	NONHSAT004520

No data

Variant related genes	Relation type
ENSG00000223745	TF binding region
ENSG00000117505	Chromatin interaction
ENSG00000223745	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523951	chr1:93793851-93795163	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93751600-93794600	Weak transcription	Brain Substantia Nigra	brain
2	chr1:93753000-93803600	Weak transcription	Adipose Nuclei	Adipose
3	chr1:93753200-93806400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr1:93755400-93802600	Weak transcription	Primary B cells from cord blood	blood
5	chr1:93755400-93803200	Weak transcription	Fetal Thymus	thymus
6	chr1:93755600-93803400	Weak transcription	Fetal Intestine Large	intestine
7	chr1:93755600-93804200	Weak transcription	Brain Anterior Caudate	brain
8	chr1:93755800-93801400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr1:93756000-93803800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr1:93765800-93809800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr1:93767800-93801400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr1:93768600-93803000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:93772600-93806000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:93779600-93804000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr1:93783000-93803400	Weak transcription	Left Ventricle	heart
16	chr1:93783800-93801200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr1:93784400-93804000	Weak transcription	Thymus	Thymus
18	chr1:93786200-93803800	Weak transcription	Primary B cells from peripheral blood	blood
19	chr1:93789000-93797200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr1:93789000-93803800	Weak transcription	Placenta	Placenta
21	chr1:93789200-93810200	Weak transcription	Esophagus	oesophagus
22	chr1:93789600-93800400	Weak transcription	Primary T cells from cord blood	blood
23	chr1:93789600-93806600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr1:93790400-93794600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr1:93790400-93800200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr1:93790600-93804600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:93790800-93803400	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr1:93790800-93810000	Weak transcription	Fetal Intestine Small	intestine
29	chr1:93791000-93794600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr1:93791000-93801600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr1:93791000-93802200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr1:93791200-93802800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr1:93791200-93803800	Weak transcription	A549	lung
34	chr1:93791800-93797200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr1:93791800-93797200	Weak transcription	Stomach Mucosa	stomach
36	chr1:93793400-93795000	Enhancers	HSMMtube	muscle
37	chr1:93793600-93796000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr1:93793800-93795000	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr1:93794000-93794600	Enhancers	NHDF-Ad	bronchial
40	chr1:93794000-93795200	Enhancers	Fetal Lung	lung
41	chr1:93794000-93795200	Enhancers	HSMM	muscle
42	chr1:93794000-93795200	Enhancers	NHLF	lung
43	chr1:93794000-93796000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr1:93794200-93794600	Enhancers	NH-A	brain
45	chr1:93794200-93794800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr1:93794200-93794800	Enhancers	Osteobl	bone
47	chr1:93794200-93795000	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr1:93794200-93795000	Enhancers	Brain Angular Gyrus	brain
49	chr1:93794200-93795000	Enhancers	Duodenum Mucosa	Duodenum
50	chr1:93794200-93795200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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