Variant report

Variant	rs545500030
Chromosome Location	chr4:99493260-99493261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99485403..99488335-chr4:99490236..99493906,4	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2760882	chr4:99460485-99521345	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3348099	chr4:99492858-99493340	Weak transcription Enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99466800-99501600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr4:99479000-99506400	Weak transcription	Aorta	Aorta
3	chr4:99483200-99495800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:99483400-99498800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:99484200-99495400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:99485000-99501400	Weak transcription	HUVEC	blood vessel
7	chr4:99485400-99495000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr4:99487200-99500000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr4:99487400-99495000	Weak transcription	Primary T cells from cord blood	blood
10	chr4:99487800-99498600	Weak transcription	NHLF	lung
11	chr4:99488000-99495200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:99488000-99495200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr4:99488000-99495400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr4:99488000-99499000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr4:99488000-99499200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:99488200-99493800	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr4:99488200-99494200	Enhancers	Brain Angular Gyrus	brain
18	chr4:99488200-99495200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr4:99488200-99495400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr4:99488200-99495400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr4:99488200-99495800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:99488200-99500200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr4:99488400-99493600	Enhancers	Brain Cingulate Gyrus	brain
24	chr4:99488400-99493600	Weak transcription	Fetal Lung	lung
25	chr4:99488400-99495400	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr4:99488600-99493400	Weak transcription	Fetal Stomach	stomach
27	chr4:99489000-99498800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr4:99489600-99493600	Enhancers	Brain Substantia Nigra	brain
29	chr4:99490200-99495000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr4:99490200-99499000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:99490400-99493600	Weak transcription	Fetal Kidney	kidney
32	chr4:99490400-99499200	Weak transcription	Brain Germinal Matrix	brain
33	chr4:99490600-99495400	Weak transcription	Colon Smooth Muscle	Colon
34	chr4:99490600-99498600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:99490600-99498800	Weak transcription	Stomach Mucosa	stomach
36	chr4:99490600-99501400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr4:99490800-99493800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr4:99490800-99495400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr4:99490800-99499600	Weak transcription	Fetal Muscle Trunk	muscle
40	chr4:99490800-99499800	Weak transcription	Right Atrium	heart
41	chr4:99490800-99506600	Weak transcription	Esophagus	oesophagus
42	chr4:99490800-99509000	Weak transcription	HSMM	muscle
43	chr4:99491000-99495000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr4:99491000-99495000	Weak transcription	NH-A	brain
45	chr4:99491000-99495200	Weak transcription	Fetal Heart	heart
46	chr4:99491000-99503400	Weak transcription	Thymus	Thymus
47	chr4:99491600-99495600	Weak transcription	Ovary	ovary
48	chr4:99492000-99495800	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr4:99492000-99496200	Weak transcription	NHDF-Ad	bronchial
50	chr4:99492000-99498600	Weak transcription	Fetal Muscle Leg	muscle

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