The 2.0 version of rSNPBase
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Variant report
Variant
rs545562174
Chromosome Location
chr18:28557872-28557873
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:1)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:1 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr18:28557858..28560836-chr18:28681657..28683306,2
K562
blood:
No data
No data
No data
Variant related genes
Relation type
ENSG00000134755
Chromatin interaction
Extended variants information (count: 2 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv833613
chr18:28446454-28623599
Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site
11 gene(s)
inside rSNPs
diseases
2
nsv909515
chr18:28556767-28584556
Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site
7 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links