Variant report

Variant	rs545584980
Chromosome Location	chr20:23083102-23083103
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23080717..23083720-chr20:23084515..23087690,4	K562	blood:
2	chr20:23074883..23076456-chr20:23081289..23084171,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2762066	chr20:23082036-23092700	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23072800-23092000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23073000-23087000	Weak transcription	Gastric	stomach
3	chr20:23073800-23085800	Weak transcription	Right Ventricle	heart
4	chr20:23075000-23085600	Weak transcription	Fetal Lung	lung
5	chr20:23077400-23084800	Enhancers	Placenta	Placenta
6	chr20:23079000-23084400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr20:23079200-23083400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr20:23079800-23083400	Enhancers	Esophagus	oesophagus
9	chr20:23081000-23085800	Weak transcription	Fetal Thymus	thymus
10	chr20:23081000-23086400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr20:23081600-23085800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr20:23082000-23089000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr20:23082200-23083200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr20:23082200-23083400	Weak transcription	HMEC	breast
15	chr20:23082200-23083400	Weak transcription	NHEK	skin
16	chr20:23082200-23083800	Enhancers	Fetal Muscle Trunk	muscle
17	chr20:23082400-23083200	Enhancers	Fetal Stomach	stomach
18	chr20:23082400-23083800	Enhancers	Left Ventricle	heart
19	chr20:23082400-23083800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr20:23082400-23084600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr20:23082400-23086200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr20:23082400-23088400	Enhancers	Adipose Nuclei	Adipose
23	chr20:23082400-23088400	Enhancers	HUVEC	blood vessel
24	chr20:23082400-23088800	Enhancers	Fetal Muscle Leg	muscle
25	chr20:23082600-23083200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr20:23082600-23083400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr20:23082600-23083400	Enhancers	Lung	lung
28	chr20:23082600-23083800	Enhancers	Primary B cells from cord blood	blood
29	chr20:23082800-23083200	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr20:23082800-23084800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr20:23082800-23086600	Enhancers	Spleen	Spleen
32	chr20:23083000-23083400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr20:23083000-23083400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr20:23083000-23083400	Enhancers	Right Atrium	heart
35	chr20:23083000-23083400	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links