Variant report

Variant	rs545586957
Chromosome Location	chr10:99530510-99530511
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99526747..99528824-chr10:99529529..99531423,2	MCF-7	breast:
2	chr10:99522811..99525043-chr10:99528774..99531185,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv467441	chr10:99472710-99541104	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv552026	chr10:99472710-99541104	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv3340017	chr10:99530387-99533135	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99522200-99530800	Weak transcription	Right Ventricle	heart
2	chr10:99526400-99531200	Weak transcription	K562	blood
3	chr10:99527600-99530600	Weak transcription	Gastric	stomach
4	chr10:99529600-99531400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
5	chr10:99530000-99531400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
6	chr10:99530200-99530800	Active TSS	Right Atrium	heart
7	chr10:99530200-99531000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
8	chr10:99530200-99531200	Bivalent Enhancer	Fetal Thymus	thymus
9	chr10:99530200-99532200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
10	chr10:99530400-99530600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
11	chr10:99530400-99530600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:99530400-99530600	Flanking Bivalent TSS/Enh	Pancreatic Islets	Pancreatic Islet
13	chr10:99530400-99530600	Bivalent Enhancer	A549	lung
14	chr10:99530400-99530800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
15	chr10:99530400-99530800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
16	chr10:99530400-99530800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
17	chr10:99530400-99530800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
18	chr10:99530400-99530800	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
19	chr10:99530400-99530800	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:99530400-99530800	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
21	chr10:99530400-99530800	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
22	chr10:99530400-99531000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
23	chr10:99530400-99531000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
24	chr10:99530400-99531000	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr10:99530400-99531000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:99530400-99531000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:99530400-99531000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:99530400-99531000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr10:99530400-99531000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
30	chr10:99530400-99531200	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr10:99530400-99531400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
32	chr10:99530400-99531400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
33	chr10:99530400-99531400	Bivalent Enhancer	Fetal Brain Male	brain
34	chr10:99530400-99531400	Flanking Active TSS	Pancreas	Pancrea
35	chr10:99530400-99532200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links