Variant report

Variant	rs545653161
Chromosome Location	chr5:74347342-74347343
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:74338841..74341157-chr5:74343981..74347541,4	MCF-7	breast:
2	chr5:74341045..74343910-chr5:74344011..74347485,4	MCF-7	breast:
3	chr5:74343645..74345260-chr5:74345382..74347449,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv1835096	chr5:74336883-74356857	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv598654	chr5:74345369-74351228	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv3421723	chr5:74346596-74351294	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74330600-74348000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:74337600-74348200	Weak transcription	Left Ventricle	heart
3	chr5:74338600-74348000	Weak transcription	Psoas Muscle	Psoas
4	chr5:74340600-74347400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:74341400-74347400	Enhancers	HMEC	breast
6	chr5:74342200-74347800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:74344400-74348000	Weak transcription	Right Atrium	heart
8	chr5:74344600-74347400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr5:74344800-74347400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:74344800-74347400	Weak transcription	Brain Hippocampus Middle	brain
11	chr5:74344800-74347800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
12	chr5:74344800-74347800	Weak transcription	Osteobl	bone
13	chr5:74344800-74348000	Weak transcription	HSMMtube	muscle
14	chr5:74344800-74348400	Enhancers	Spleen	Spleen
15	chr5:74345200-74347400	Enhancers	Placenta	Placenta
16	chr5:74345200-74347600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:74345400-74347600	Flanking Active TSS	Primary T cells from cord blood	blood
18	chr5:74345400-74347600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
19	chr5:74345400-74348000	Flanking Active TSS	Duodenum Mucosa	Duodenum
20	chr5:74345600-74347600	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
21	chr5:74345600-74347800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr5:74345600-74347800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
23	chr5:74345600-74347800	Enhancers	GM12878-XiMat	blood
24	chr5:74345600-74348400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
25	chr5:74345800-74347600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr5:74345800-74347600	Enhancers	Esophagus	oesophagus
27	chr5:74345800-74347600	Enhancers	Lung	lung
28	chr5:74345800-74348400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
29	chr5:74346000-74348000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr5:74346000-74350200	Active TSS	Brain Inferior Temporal Lobe	brain
31	chr5:74346200-74347600	Weak transcription	A549	lung
32	chr5:74346200-74347800	Weak transcription	Adipose Nuclei	Adipose
33	chr5:74346200-74347800	Flanking Active TSS	Stomach Smooth Muscle	stomach
34	chr5:74346400-74347400	Enhancers	Right Ventricle	heart
35	chr5:74346400-74347600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr5:74346400-74347800	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr5:74346400-74350400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
38	chr5:74346600-74347400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
39	chr5:74346600-74347400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr5:74346600-74347400	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr5:74346600-74347600	Flanking Active TSS	H9 Cell Line	embryonic stem cell
42	chr5:74346600-74347600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
43	chr5:74346600-74347600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr5:74346600-74347600	Flanking Active TSS	Fetal Intestine Large	intestine
45	chr5:74346600-74347600	Transcr. at gene 5' and 3'	Thymus	Thymus
46	chr5:74346800-74347400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
47	chr5:74346800-74347400	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr5:74346800-74347400	Flanking Active TSS	Gastric	stomach
49	chr5:74346800-74347400	Flanking Active TSS	Stomach Mucosa	stomach
50	chr5:74346800-74347400	Flanking Active TSS	NHDF-Ad	bronchial

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